Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05577 and BPUM_3294
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_05577___ywoA.1.24716.seq
# -bsequence dna-align/BPUM_3294___ywoA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05577___ywoA-BPUM_3294___ywoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05577___ywoA-BPUM_3294___ywoA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05577___ywoA
# 2: BPUM_3294___ywoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 680
# Identity: 389/680 (57.2%)
# Similarity: 389/680 (57.2%)
# Gaps: 148/680 (21.8%)
# Score: 1004.0
#
#
#=======================================
BSNT_05577___ 1 ------------------------------TTGAACTACGAAATTTTTAA 20
|||||.||||||.|.|||||
BPUM_3294___y 1 TTGGCATTAAGCGAAGGTATAGGTGATGTTTTGAATTACGAACTGTTTAA 50
BSNT_05577___ 21 AGCAATCCATGGACTATCTCATCACAATTC---AGTTCTCGAT---TCCA 64
|...||.||.||..|..|||||| |||| |.||.|.||| .||
BPUM_3294___y 51 ATTGATACACGGGATGGCTCATC---ATTCTGAATTTTTAGATCAGGCC- 96
BSNT_05577___ 65 TTATGGTCTTCATAACGGAATATGCCATTATCGCCTATGCCCTTATCCTA 114
|||.|.|||||.|||.||.|.|||.||.|.|..|||||||||.|..||
BPUM_3294___y 97 --ATGATTTTCATTACGAAAAAGGCCCTTCTTGTGTATGCCCTTGTTTTA 144
BSNT_05577___ 115 TTGGCAAT---CTGGCTGTTTGGGAA-CACACA---AAGCAGAAAACATG 157
||| || ||||.|.||.||.|| ||||.| ||| ||.||||
BPUM_3294___y 145 TTG---ATTTGCTGGTTTTTAGGTAATCACAAATTTAAG----AAGCATG 187
BSNT_05577___ 158 TGCTATACGCAGGCATCACAGGAATTGCAGGC-CTTGTGATCAACTATTT 206
|..|.|...|.||..|.|||||.||.|| ||| |||.|..|||| .|||
BPUM_3294___y 188 TCTTCTTTTCTGGTGTAACAGGCATCGC-GGCACTTATCGTCAA--TTTT 234
BSNT_05577___ 207 G--ATTACGCTTGTTT-ATTTCGAACCGCGCCCGTTCGTTGCGCATACAG 253
| |||||.| ||||| |||..||...|||.|||||.||.|||||||.||
BPUM_3294___y 235 GCCATTACAC-TGTTTCATTATGAGGAGCGGCCGTTTGTGGCGCATAAAG 283
BSNT_05577___ 254 TGCATACACTGATTCCGCATGCTGCGGATGCTTCATTTCCAAGTGACCAC 303
|..|.|||||.||||||||..|.||.||.|||||.||.|||||||||||.
BPUM_3294___y 284 TTGACACACTCATTCCGCACTCAGCAGACGCTTCCTTCCCAAGTGACCAT 333
BSNT_05577___ 304 ACGACAGGCGCATTAGCGATTTCTATTG-----CGATGCTTTTCAGAAAC 348
||.|||||.|||.|.||..||||..||| |||| ||..|.|.|||.
BPUM_3294___y 334 ACAACAGGTGCACTGGCTCTTTCACTTGCCATTCGAT-CTCGTAATAAAA 382
BSNT_05577___ 349 CGC-----AAAATCGGCTGGCCGCTTG-TCATTTTTGGGCTTTTGACAGG 392
.|| ||.|| |||| ||.|.|||||..|..|.|||||
BPUM_3294___y 383 AGCTTGGTAACAT----------CTTGCTCGTCTTTGGATTACTCACAGG 422
BSNT_05577___ 393 CTTTTCGAGAATTTGGGTGGGACATCACTATCCGGTAGATGTATTGGGCA 442
.||.||..|.||.|||||.||.||.||.|||||..|||||||.||.||||
BPUM_3294___y 423 ATTCTCCCGCATCTGGGTCGGTCACCATTATCCATTAGATGTTTTAGGCA 472
BSNT_05577___ 443 GCCTCGT--TATCGCCATCATTATCGGGTTCCTTTTCTT---TAGATTTT 487
||.|..| ||||| ||..|..|||.|| ||.||.| ||.|||.|
BPUM_3294___y 473 GCTTGATTGTATCG--ATTGTGGTCGTGT---TTATCATGAATAAATTAT 517
BSNT_05577___ 488 CAGATCTGCTTCGCCCGTTCGTCGATTTG-----GTCGTGAGGATCTATG 532
.||..|.|||.|.| || ||.|.||| .||||.|...||||||
BPUM_3294___y 518 -GGAAGTTCTTTGAC---TC-TCCAATTGATCGCATCGTCACTTTCTATG 562
BSNT_05577___ 533 A-AGCCATTATCAATAAACTGACGAAAAAA--------------CCAACC 567
| | |||| |||.|.||||| |.||..
BPUM_3294___y 563 AGA--------CAAT----TGAAGGAAAAATATTCAGAAGGAAGCAAAAG 600
BSNT_05577___ 568 GATCA--------AAATTTCTAA------- 582
||||| |..|.|||||
BPUM_3294___y 601 GATCAGGGCTCTGACCTGTCTAACTCTTAA 630
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