Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05449 and BPUM_3221

See Amino acid alignment / Visit BSNT_05449 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:04
# Commandline: needle
#    -asequence dna-align/BSNT_05449___tagG.1.24716.seq
#    -bsequence dna-align/BPUM_3221___tagG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05449___tagG-BPUM_3221___tagG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05449___tagG-BPUM_3221___tagG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05449___tagG
# 2: BPUM_3221___tagG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 861
# Identity:     609/861 (70.7%)
# Similarity:   609/861 (70.7%)
# Gaps:          66/861 ( 7.7%)
# Score: 2059.0
# 
#
#=======================================

BSNT_05449___      1 ATGAATGCATTAGTGAGAATACTGAAAGAGCA----AGCAACGTCATTTT     46
                     |||||.|||.|..|||..|||||.||.|||||    |||    ||||||.
BPUM_3221___t      1 ATGAACGCAATGTTGACGATACTAAAGGAGCAAATTAGC----TCATTTC     46

BSNT_05449___     47 C-TTTAATATTACGCTTGGCAGCTTACGAAACAAAATCAAAATACCAAAT     95
                     | .|.|.|||...|||| ||.|.|||.|||||.|||||||||||.||.||
BPUM_3221___t     47 CGCTGATTATGCGGCTT-GCTGTTTATGAAACTAAATCAAAATATCAGAT     95

BSNT_05449___     96 GAACTATTTGGGTGTGCTGTGGCAGTTGTTAAATCCACTCATTCAAATGT    145
                     |||.|||||.|||||..|.||||||||.|||||||||.|.|||||||||.
BPUM_3221___t     96 GAATTATTTAGGTGTTTTATGGCAGTTTTTAAATCCATTGATTCAAATGC    145

BSNT_05449___    146 TGGCCTACTGGTTTGTTTTTGGGATCGGGATTAGAA----------AAAG    185
                     ||||.|||||||||||||||||  ||.||    |||          |.||
BPUM_3221___t    146 TGGCTTACTGGTTTGTTTTTGG--TCTGG----GAATCCGCGGAGGACAG    189

BSNT_05449___    186 CACTGATGTGGTTA--CGGGTATTGGTGAAGTGTCTTTTATCATTTGGAT    233
                     |.|    .|.||||  .|||.|.||  |||||..||||||||||||||||
BPUM_3221___t    190 CCC----ATTGTTATTGGGGGAATG--GAAGTTCCTTTTATCATTTGGAT    233

BSNT_05449___    234 GCTAGCCGGTTTGATTCCGTGGTTTTTTATCAGCCCGACGATTCTAGATG    283
                     |||.||.||.||.||.||.|||||.||.||.||.||.||||||||.||||
BPUM_3221___t    234 GCTTGCGGGATTAATCCCTTGGTTCTTCATTAGTCCAACGATTCTTGATG    283

BSNT_05449___    284 GTTCAAACAGTGTATATAAGCGAATCAACATGGTGGCCAAAATGAATTTT    333
                     |.|||||||||||.|.|||.||.||.||.|||||..|.||||||||.|||
BPUM_3221___t    284 GATCAAACAGTGTGTTTAAACGCATTAATATGGTATCGAAAATGAACTTT    333

BSNT_05449___    334 CCAATTAGCTCGCTTCCTTCAGTAGCGATTGTGGCAAACCTGTTCAGCTA    383
                     ||.|||||..||||.||.||.||||.||||.||.|.|||.|||||||.||
BPUM_3221___t    334 CCGATTAGTGCGCTGCCGTCTGTAGTGATTATGTCCAACTTGTTCAGTTA    383

BSNT_05449___    384 TTTTGTGATGATGGTGA-TTTAT---ATCGT--TGCATTAACAGCGTCTG    427
                     .|||||.||||||| || |.|||   ||.||  ||..||     |.|.||
BPUM_3221___t    384 CTTTGTCATGATGG-GAGTCTATCTGATTGTGCTGATTT-----CCTATG    427

BSNT_05449___    428 GTATTTATCCAAGTCTTCATTGGATTGAATACATTTACTATTTTATCTGT    477
                     |.||.||.||...|...||.|||.|..||||.||.||||||.||||.|||
BPUM_3221___t    428 GCATATACCCTGATGCGCACTGGCTGCAATATATATACTATCTTATTTGT    477

BSNT_05449___    478 ATGGTTATATTTATGTTTGCCTTTAGTTTGTTTAATTCAACCATTAGTGT    527
                     |||.|....|||||||||.|.|||||||||||||||||.||.|||||.||
BPUM_3221___t    478 ATGATCGCGTTTATGTTTTCGTTTAGTTTGTTTAATTCCACGATTAGCGT    527

BSNT_05449___    528 GCTTGTTAGGGACTATCAGTTTTTGCTCCAATCTGTGACAAGGCTGCTGT    577
                     .||.||.|||||||||||.|||.|..|.|||||.||||||.|..||||.|
BPUM_3221___t    528 ACTCGTGAGGGACTATCAATTTCTTTTACAATCCGTGACACGTTTGCTTT    577

BSNT_05449___    578 TTTTTTTGTTGCCTATCTTTTGGGATAT-----AGGACATCAGT-TAGGG    621
                     |.||||||.||||.||.||||||.||||     ||.|..|||.| .||..
BPUM_3221___t    578 TCTTTTTGCTGCCGATTTTTTGGAATATCTCAGAGAAGCTCACTGGAGAC    627

BSNT_05449___    622 AAAG--AGCATC-CCGTTTTACTAACAGCTATTAAACTGAATCCACTTTT    668
                     ||||  .|.||| ..|.|.|||||         |||.|||||||.|||||
BPUM_3221___t    628 AAAGGATGGATCGGGGATATACTA---------AAATTGAATCCTCTTTT    668

BSNT_05449___    669 TTATATTTTAGATGGATTTAGAAGCAGCTTTTTCGACGGAAGCTGGTTCT    718
                     .||.|||.|.|||||.|||||||..|||||.||..|.|||...|||||||
BPUM_3221___t    669 CTACATTATTGATGGTTTTAGAAATAGCTTGTTAAAGGGAGAATGGTTCT    718

BSNT_05449___    719 TCGAAGATATAACATACACGTTGTATTTCTGGGCT-TTCACATTATTGCT    767
                     ||.|.|||.|.|.|||.|||.|.||||| |.|||| .||||..||.|.||
BPUM_3221___t    719 TCCATGATGTGAAATATACGCTTTATTT-TTGGCTGATCACGCTACTTCT    767

BSNT_05449___    768 CTTGACTGTAGGATCTGTCCTGCATATGAAATTCAGGGATAGGTTTGTTG    817
                     .||.||.||.||.||..|.||.|||||||||||.|||||||..|||||.|
BPUM_3221___t    768 TTTAACAGTCGGTTCATTGCTTCATATGAAATTTAGGGATAAATTTGTCG    817

BSNT_05449___    818 ACTTTCTTTAA    828
                     |.|||||||||
BPUM_3221___t    818 ATTTTCTTTAA    828


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05449 and BPUM_3221

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
