Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05378 and BPUM_3185

See Amino acid alignment / Visit BSNT_05378 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:00
# Commandline: needle
#    -asequence dna-align/BSNT_05378.1.24716.seq
#    -bsequence dna-align/BPUM_3185___flaG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05378-BPUM_3185___flaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05378-BPUM_3185___flaG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05378
# 2: BPUM_3185___flaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 345
# Identity:     139/345 (40.3%)
# Similarity:   139/345 (40.3%)
# Gaps:         156/345 (45.2%)
# Score: 451.5
# 
#
#=======================================

BSNT_05378         0 --------------------------------------------------      0
                                                                       
BPUM_3185___f      1 ATGTCTGTTGGTAAGTTGACGTCGCTAGAGCCAATTATCGATGCATTTCA     50

BSNT_05378         0 --------------------------------------------------      0
                                                                       
BPUM_3185___f     51 AACCCGTGTTTCTAATAACCAGAATGACAATGTAAACCCTGACTCACAAG    100

BSNT_05378         1 ---------------------------------------------ATG--      3
                                                                  |||  
BPUM_3185___f    101 CAAATGGCAAGGTCGTTTCAAAAGAAGAAATTGAAAAAACGCTTCATGGA    150

BSNT_05378         4 ---AACAAGCTTTTGGAACCTTCGCAAGTTCATCTGAAGTTCGAGCTTCA     50
                        |||||.||..|.|||||..|.|||.||||||||.|.||.||..|.||
BPUM_3185___f    151 GCAAACAAACTGATTGAACCCACTCAATTTCATCTGCAATTTGAATTACA    200

BSNT_05378        51 TGACAAGTTAAATGAATACTATGTAAAGGTAATAGAGGACTCTACAAATG    100
                     |||.||..|.||||||||.|||||.||.||..||||..||...|||.|.|
BPUM_3185___f    201 TGAAAAACTCAATGAATATTATGTCAAAGTCGTAGATAACCAAACAGAAG    250

BSNT_05378       101 AAGTGATCCGCGAAATTCC-ACCAAAACGG--TGGCTTGATTTTTATGCG    147
                     ||||.||..|.||.||||| .||||   ||  |||||||||||.||||||
BPUM_3185___f    251 AAGTCATTAGAGAGATTCCTTCCAA---GGAATGGCTTGATTTCTATGCG    297

BSNT_05378       148 GCTATGACTGAATTTCTTGGGTTATTTGTAGATGAAAAAAAGTAG    192
                     ||.|||||.||..|..|.||.||||||||||||.|||..|.|||.
BPUM_3185___f    298 GCAATGACAGAGATAGTCGGTTTATTTGTAGATAAAAGGATGTAA    342


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