Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04889 and BPUM_3176
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_04889.1.24716.seq
# -bsequence dna-align/BPUM_3176___yusX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04889-BPUM_3176___yusX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04889-BPUM_3176___yusX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04889
# 2: BPUM_3176___yusX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2022
# Identity: 1172/2022 (58.0%)
# Similarity: 1172/2022 (58.0%)
# Gaps: 453/2022 (22.4%)
# Score: 3178.5
#
#
#=======================================
BSNT_04889 1 --------------ATGGCGCTGCAAGGGGTAGGCCAAAGA--TGGGATC 34
|| |.|||| ||| ||||||.
BPUM_3176___y 1 TTGGGATTAACAACAT-----TACAAG-----------AGACGTGGGATT 34
BSNT_04889 35 TTGATTCATTTTTTAAGGGCGGAAG-------CCAATCGGAAGAATTCAA 77
|.|||.|.||||||||.||.||.|| || ||.||||||
BPUM_3176___y 35 TAGATGCCTTTTTTAAAGGAGGCAGTTCTTCACC-------AGCATTCAA 77
BSNT_04889 78 AGGTT---------ATATTGAGAAGCTGTCACAAAGTCTGCGTGCATTTC 118
|...| |.||||||.||||.|.|.| ||.|||
BPUM_3176___y 78 AACATACTTGCAACACATTGAGCAGCTATTAGA---------TGAATT-- 116
BSNT_04889 119 AAGAC---AGGACTGATGCGTTT--CAGGTGCCTGAATCGCCTGAAGAGG 163
|.||| |||.| |||||.||| || || |||||..
BPUM_3176___y 117 ACGACAAAAGGTC-GATGCCTTTTCCA--------AA------GAAGATA 151
BSNT_04889 164 C----------------TGAAGGGCTGACCGCGTTGCTTGATT------T 191
| |.||.|.||| |.||| |
BPUM_3176___y 152 CACACATTGAAAATAAGTTAACGTCTG-----------TCATTGACACGT 190
BSNT_04889 192 ATTCGAACAGACAT--------CCG--TCAAGC---TTCAGCAGGCCGGC 228
|| |||...|||| |.| |||||| ||||
BPUM_3176___y 191 AT--GAAACCACATATAAAAAACTGTCTCAAGCAGGTTCA---------- 228
BSNT_04889 229 GCGTTTGTTGCCTGCCTCCAGGCCCAGAATATCAATGATCAAAAGGCT-A 277
|||||..||||.||.||..|.||.||||..||.|||...|||||| .
BPUM_3176___y 229 ---TTTGTATCCTGTCTTCAATCGCAAAATACAAAGGATATGAAGGCTGG 275
BSNT_04889 278 TAGAGCATC-AGGCACTCAT----------GAACCGGCTTT-----CC-- 309
||| .|.|| |||.|| .|| |||.|.|.||| ||
BPUM_3176___y 276 TAG-TCTTCGAGGTAC-GATTGCTAAGTTGGAAGCTGATTTAGGTACCAT 323
BSNT_04889 310 ----GCAGATTTTCAATC-GTCGCTCGTTAC-ATT------AGATCATAA 347
|| |.|.||..||| |.||||.|.|.| ||| || .||
BPUM_3176___y 324 ACTTGC-GCTGTTTGATCAGGCGCTTGCTGCTATTTCTCCAAG----CAA 368
BSNT_04889 348 ACTTGTGGACGTAGATCAAGACGTGTGGAATGAATTGCTAACAAAACCGG 397
| ||| |.||||| ..||||||| ||.| ||
BPUM_3176___y 369 A----TGG--GAAGATC----------TCATGAATT-----CAGA---GG 394
BSNT_04889 398 GATTAAGAGATATATC-TTACATATTAAATGAAAGAAGACA------GAG 440
..||...||||.| || .|||||||||||||||.|.|||.| ||.
BPUM_3176___y 395 CCTTTTCAGATGT-TCGCTACATATTAAATGAACGGAGAGACCGCGTGAA 443
BSNT_04889 441 GG-----TTGCC----GAAAAGCTTAGCCCCGGTAAAGAAAAACTGATCG 481
|| ||||| ||| .||||||.|.||||..
BPUM_3176___y 444 GGATCAATTGCCTGTTGAA---------------CAAGAAACATTGATTC 478
BSNT_04889 482 GGAACCTTGCCGTGGACGGATATCACGCTTGGAGTGACTTATACAATA-- 529
..||.||.||.||.||.||.|||||.||.|||..|||.||.||...||
BPUM_3176___y 479 AAAAGCTAGCTGTTGATGGCTATCATGCGTGGGATGATTTTTATTCTAGC 528
BSNT_04889 530 -TGGT---TGTCGGGAAAATGACGATCCCGTATGGGGAAAATGGTGAAAA 575
|||| | |||||.|||||.||||.||...||.||||||||
BPUM_3176___y 529 TTGGTAAAT------AAAATTACGATTCCGTTTGAACAACATGGTGAA-- 570
BSNT_04889 576 CAAGCAATTG---TCTGTCGGTCAGGCGGAGAATATGATGGACCATCAAG 622
|.|||..|| |||||.||.||.|||||.|||...|||||..||..||
BPUM_3176___y 571 -ACGCAGATGATCTCTGTTGGCCAAGCGGAAAATGCAATGGATGATTCAG 619
BSNT_04889 623 ACCGTACTGTCAGAAAAACAGTATATGAACGTTTCCGCC--AAGCTTGGG 670
|||||...||||||||..|.||.|| || ||.||
BPUM_3176___y 620 ACCGTGAAGTCAGAAAGGCTGTTTA------------CCATAACCT---- 653
BSNT_04889 671 AGAGCAAGCA----------------AGATATTTTCAGCAA-CACGCTGA 703
||||||.||| |..||||| |||| ||||||.|
BPUM_3176___y 654 AGAGCATGCATGGACGCAGGATGAACATCTATTT---GCAAGCACGCTCA 700
BSNT_04889 704 ATCATTTGGCGGGATTCCGGCTCGAAACCTATAAGGCGCGTGGCTGGGAG 753
||||||||||.||.||.||..|..||...|||.|.||..|.||||||||.
BPUM_3176___y 701 ATCATTTGGCAGGTTTTCGTTTGCAAGTATATGAAGCAAGAGGCTGGGAT 750
BSNT_04889 754 AATGTCCTGAAGGAACCGCTGCAAATTAACAGGATGAAAAAAGAAACACT 803
.||.|..|.||.||.|||||..|.|||..|.||||||||.||||.||.||
BPUM_3176___y 751 CATATTTTAAAAGAGCCGCTTGATATTTGCCGGATGAAACAAGAGACCCT 800
BSNT_04889 804 TGATACGATGTGGCAGGTCATCACTGAAAACAAGAAGCCGTTCGTTCAGT 853
||||.|.||||||...||.||...||||.|.|||.|.||.||..||.|.|
BPUM_3176___y 801 TGATGCCATGTGGTCTGTGATAGATGAACATAAGCAACCATTTATTGATT 850
BSNT_04889 854 TTTTGAACCGGAAAGC--ATCCATGCTCGGCCTTGAAAAACTCAGCTGGT 901
..||..|.||.||.|| || |||||.||..|.||.||.||.|||||||
BPUM_3176___y 851 ACTTACATCGAAAGGCTGAT--ATGCTAGGAGTGGATAAGCTAAGCTGGT 898
BSNT_04889 902 ACGATGTCGAGGCACCGATCGGTTCTGACGGA--AAGGTCTATTCGTATG 949
..|||||.|.|||.||.||.|||..||| || |||.|.|||.|||||.
BPUM_3176___y 899 TTGATGTTGGGGCTCCTATTGGTAGTGA--GACCAAGATTTATCCGTATC 946
BSNT_04889 950 ATGAAGCCGCAAATATCATT----ACCAGCCAGTTTTCAAC---GTTTGG 992
|.|||||.||...|.|.||| |.|| |||| .| ||||||
BPUM_3176___y 947 AGGAAGCAGCGGCTTTTATTGTGAAACA------TTTC-GCTGGGTTTGG 989
BSNT_04889 993 CAAAAAGCTGTCCT-----CATTCACTGAAAAAGCGTTTCGGGACGGCTG 1037
|||.|..|| |.||.||.|||||.||.|||...||..||||
BPUM_3176___y 990 -----AGCGGAGCTTGCTGCCTTTACAGAAAAGGCCTTTAATGAACGCTG 1034
BSNT_04889 1038 GATTGAGGCGGAAGACAGGAGCG---GA--AAAAGAGTCGGCGGCTTTTG 1082
|.|.||.||.| ||||.|| || |||.||||.|||||.|||||
BPUM_3176___y 1035 GGTAGAAGCTG-----AGGATCGCCCGAACAAACGAGTAGGCGGTTTTTG 1079
BSNT_04889 1083 CACCAGTTTTCCTGACAGCGGGGAATCCCGGATTTTCATGACATTTTCGG 1132
.||.|.|||.|||||||||||.||.||.||.|||||.|||||.||.||.|
BPUM_3176___y 1080 TACAAATTTCCCTGACAGCGGAGAGTCGCGTATTTTTATGACCTTCTCAG 1129
BSNT_04889 1133 GCAGCGCCTCAAATGTCTCTACTCTTGCGCATGAACTCGGGCACGCGTTC 1182
|.||..|.||.|||||..|.||.||.||||||||.||.||.||..|.|||
BPUM_3176___y 1130 GAAGTCCATCCAATGTGGCGACACTCGCGCATGAGCTTGGTCATTCTTTC 1179
BSNT_04889 1183 CATCAGGAAGCAATGCTCGACGT---CAGGCCGTTAAACCGCTCCTACGC 1229
||||||||||..||||..||.|| ||..| |.||.|||...||.||
BPUM_3176___y 1180 CATCAGGAAGTGATGCAGGATGTTCGCATTC---TTAATCGCAAATATGC 1226
BSNT_04889 1230 CATGAATGTTGCAGAAACAGCTTCAACGTTTGCAGAGATGATAGTCGCGG 1279
.||||||||.||.|||||.||.||.||.||.|||||.|||||.||.||.|
BPUM_3176___y 1227 GATGAATGTCGCTGAAACGGCGTCGACATTCGCAGAAATGATTGTGGCTG 1276
BSNT_04889 1280 ACGCGACTGTCCAGCAGGCCGAGACGAGG-----GAAGAG--------AA 1316
|.||..|..|..| |||.|.|| |||||| .|
BPUM_3176___y 1277 ATGCTTCATTAAA--------AGAAGCGGCAAATGAAGAGGAACGTCTCA 1318
BSNT_04889 1317 GCTTGTTCTTCTGGAGGATAAAGTGCAAAGAAGTGTTGCGTTCTTCATGA 1366
|.|||| |.||||||||..||||..|.|||||.||.||.|||||||
BPUM_3176___y 1319 GTTTGT-----TAGAGGATAAGCTGCAGCGGAGTGTCGCATTTTTCATGA 1363
BSNT_04889 1367 ACATTCA----CGCAAGATTTC-TATTCGAAACGAGATTCTACGAGGAAC 1411
||||||| || |||| ||||.|||..|.|.||.||.||.||.|
BPUM_3176___y 1364 ACATTCAATCTCG-----TTTCTTATTTGAACAGCGCTTTTATGAAGAGC 1408
BSNT_04889 1412 GAAAGCGGGGAGTGGTACCGGCCAGCCGCTTGAATGAGCTGATGGAAG-A 1460
||||.|..||||..||.|||||...|||.||||||||||||||||.|| |
BPUM_3176___y 1409 GAAAACAAGGAGAAGTGCCGGCGGACCGTTTGAATGAGCTGATGGTAGCA 1458
BSNT_04889 1461 G-GCACAAAGAGAGGCAT-----ACTGCAATGCGTTAGAAGAATATCATC 1504
| |||.||||| ||.|.| ||| |.|||||.|||||.||||
BPUM_3176___y 1459 GCGCAGAAAGA-AGCCTTTGGCGACT------CATTAGATGAATACCATC 1501
BSNT_04889 1505 CGCTTTTTTGGGCATCAAAACTTCACTTTCACATCACGAGGGTGCCGTTT 1554
|||.|||.|||||.||.|||||.||.||.||.||||||.|.||.||||||
BPUM_3176___y 1502 CGCATTTCTGGGCGTCTAAACTGCATTTCCATATCACGGGTGTTCCGTTT 1551
BSNT_04889 1555 TACAATTTCCCTTATACATTCGGCTACCTATTTTCTCTTGGCATTTACGC 1604
||.||||||||.||.|||||.||||||.|.||.||.||.||.|||||.||
BPUM_3176___y 1552 TATAATTTCCCATACACATTTGGCTACATGTTCTCACTAGGGATTTATGC 1601
BSNT_04889 1605 -------------GCTGG-----CGCTTGAAGAAAAA---AATGCAT--T 1631
||||| ||.||||||||||| |.||||| |
BPUM_3176___y 1602 AAAAGCCTTGGAGGCTGGTACTTCGTTTGAAGAAAAATACATTGCATTAT 1651
BSNT_04889 1632 TGAAGAGAAGTATATGGCGCTATTGCGCGATACTGCTTCTATGACAGTGG 1681
|.||| |||||.|||||.||||||||.|
BPUM_3176___y 1652 TAAAG-----------------------GATACAGCTTCAATGACAGTAG 1678
BSNT_04889 1682 AGGATTTGGCGATGAAGCATTTGGGCG-----CTGACATCACGAAGCGTG 1726
|.||||||||..|.|||||.||.||.| ||.|| .||..|| |
BPUM_3176___y 1679 AAGATTTGGCCTTTAAGCACTTAGGTGTCGATCTTAC-CCAAAAA----G 1723
BSNT_04889 1727 ATTTTTGGGAGAATGCCATCAAGCTGGCTGT-GCGTGACGCCGAAACCTT 1775
|||||||||||.|.|||||.|..|||||||| || .||.||.|||...||
BPUM_3176___y 1724 ATTTTTGGGAGGAAGCCATTAGCCTGGCTGTAGC-AGATGCTGAAGAGTT 1772
BSNT_04889 1776 TTTGCAAATGACCGAATCTTAA 1797
|||..||..|||..||...|||
BPUM_3176___y 1773 TTTAGAAGCGACGAAAAAGTAA 1794
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