Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05102 and BPUM_3037
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_05102___yvaN.1.24716.seq
# -bsequence dna-align/BPUM_3037.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05102___yvaN-BPUM_3037.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05102___yvaN-BPUM_3037.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05102___yvaN
# 2: BPUM_3037
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 473
# Identity: 262/473 (55.4%)
# Similarity: 262/473 (55.4%)
# Gaps: 133/473 (28.1%)
# Score: 696.0
#
#
#=======================================
BSNT_05102___ 1 ATGGAAAGCTTTGGCGAACAATTACGGGCATTGCGTGAAGAG-----AGA 45
|||.|...||||||.|||||||||| ||||| |.||||| |||
BPUM_3037 1 ATGAATCACTTTGGTGAACAATTAC--GCATT---TTAAGAGAAAATAGA 45
BSNT_05102___ 46 AAGTTAACAGTCAACCAGCTGGCGACTTATTCAGGCGTAAGCGCGGCCGG 95
||..|..|.|||||.||.||.||.|..||||||||.||||||||.||.||
BPUM_3037 46 AAAATGTCTGTCAATCAACTCGCCATGTATTCAGGTGTAAGCGCTGCTGG 95
BSNT_05102___ 96 CATCTCCAGAATCGAAAACGGAAAACGGGGCGTTCCCAAACCTGCCACCA 145
.||.||..|.||.|||||.|||||.||.||.||.||.||.|||...||||
BPUM_3037 96 TATTTCTCGTATTGAAAATGGAAAGCGTGGTGTGCCGAAGCCTTTAACCA 145
BSNT_05102___ 146 TCAAAAAACTGGCAGAGGCCTTAAAAATTCCTTATGAGGGACTTATGTAC 195
|.||||||.|.|||.|.|||||.||..|.|||||||||| ||.|
BPUM_3037 146 TAAAAAAATTAGCACACGCCTTGAAGGTGCCTTATGAGG-----ATTT-- 188
BSNT_05102___ 196 AAGGCTGGTT--------------ACATCGAAGAAGTGCATGAAGCCAGG 231
||.||||.|| ||| .|||.||||.||||||
BPUM_3037 189 AATGCTGCTTGCCGGTCATATTGAACA-GGAACAAGTTCATGAA------ 231
BSNT_05102___ 232 GCCCCTTATGAAACGAA-----------GTGCAAGCTGCTTGAAA----- 265
|||||||.|| ||| ||||||
BPUM_3037 232 -------ATGAAACCAAAATATGAATCCGTG--------TTGAAAATCTA 266
BSNT_05102___ 266 --AAGCGGAGGCTT----ATGATCTGAAAAACCTTGCGCTTCTT-----G 304
||.||| .|||| |.|||.|..||.|.||| |.|.|.|| |
BPUM_3037 267 TCAAACGG-CGCTTCAAAAGGATGTAGAACATCTT-CCCATGTTTGACGG 314
BSNT_05102___ 305 AGAAC-----GAAAAGTGGCAATAT-CTCAATAAAGAAGATTTGCTCAT- 347
|||.| |||| ||| ||| |.| |.|||| |||
BPUM_3037 315 AGACCTATGGGAAA---GGC--TATCCGC-----ACAAGA------CATC 348
BSNT_05102___ 348 -----GCTGGATCATTA---TTTTTCGTTTATTTCAGACGAAGCCAAAAA 389
||||.||.|.|| |.||.||.|.||| |.|||||||
BPUM_3037 349 AGCCAGCTGAATGAATACTTTCTTACGCTCATT--------AACCAAAAA 390
BSNT_05102___ 390 ACGGTCTGCTGATGACTGA---- 408
| .||.||.|.|
BPUM_3037 391 A--------AGACGAATAAATAG 405
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