Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04964 and BPUM_2990

See Amino acid alignment / Visit BSNT_04964 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence dna-align/BSNT_04964___fhuC.1.24716.seq
#    -bsequence dna-align/BPUM_2990___fhuC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04964___fhuC-BPUM_2990___fhuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04964___fhuC-BPUM_2990___fhuC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04964___fhuC
# 2: BPUM_2990___fhuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 838
# Identity:     604/838 (72.1%)
# Similarity:   604/838 (72.1%)
# Gaps:          50/838 ( 6.0%)
# Score: 2128.0
# 
#
#=======================================

BSNT_04964___      1 ATGAATTCATTATCAACGGAACAGCTTGGAATCGGTTATGGCGACAGGGT     50
                     |||||.||..|...|||.|||.||||..|.|||||||||...|||.|..|
BPUM_2990___f      1 ATGAAATCGCTCGAAACAGAAAAGCTATGTATCGGTTATCAGGACCGTTT     50

BSNT_04964___     51 GATTGTAGAGGATTTAAATA----TATCGATTCCTAAAGGGAAAATTACC     96
                     ||||||||||||||||||||    ||||    ||.|||||.||..|.||.
BPUM_2990___f     51 GATTGTAGAGGATTTAAATATCAGTATC----CCAAAAGGCAAGGTGACA     96

BSNT_04964___     97 ACCTTAATTGGCCCGAACGGCTGCGGGAAATCAACGATTTTAAAAACAAT    146
                     ||.||.||.||.|||||.||.|||||||||||||||||.|||||||||||
BPUM_2990___f     97 ACATTGATCGGACCGAATGGGTGCGGGAAATCAACGATATTAAAAACAAT    146

BSNT_04964___    147 GTCCAGAATTATG-CGTTCACATGCAGGTGCCGTCTATTTAAACGGCAAA    195
                     ||||.|.||.||| .||.|| |...|||.||.||.||.|||||.||..||
BPUM_2990___f    147 GTCCCGTATCATGAAGTCCA-ACCGAGGCGCTGTTTACTTAAATGGTCAA    195

BSNT_04964___    196 GCGATTCATAAAATGTCTACAAAGGACATTGCAAAAGATATGGCGATTCT    245
                     ||.||||||.|||.|.|||||||.||.|||.|||||.|.||||||||.||
BPUM_2990___f    196 GCTATTCATCAAACGCCTACAAAAGAAATTTCAAAACAGATGGCGATCCT    245

BSNT_04964___    246 TCCACAGACACCTGAAGCGCCGAGCGGCCTAACAGTGCACGAATTGGTGT    295
                     .||.||.||.||.|||||.||.|||||.||.||||||.|.||..|.||||
BPUM_2990___f    246 ACCGCAAACGCCCGAAGCACCAAGCGGACTGACAGTGTATGAGCTTGTGT    295

BSNT_04964___    296 CGTACGGCAGGTTT-CCGCATCAATCAGGATTCG---GCAGATTAAATGA    341
                     |.||.|| |.|||| |||||||||...|||||.|   ||..||.||||||
BPUM_2990___f    296 CATATGG-ACGTTTCCCGCATCAAAATGGATTTGGTCGCTTATCAAATGA    344

BSNT_04964___    342 CGA-AGACCGCCGGATTATCAAATGGGCGCTTGAAGAAACAGGCATGGCT    390
                     .|| |.|    ||.||.||||.||||||.|||||.|||||.||||||..|
BPUM_2990___f    345 AGATAAA----CGAATCATCAGATGGGCACTTGAGGAAACGGGCATGATT    390

BSNT_04964___    391 GAATATGCTGAACGGCCGATTGAGGCATTGTCAGGCGGACAGCGTCAACG    440
                     |..|.|..|||.|||||.|||||.|||.|.||.||.|||||||||||.||
BPUM_2990___f    391 GCTTTTCATGACCGGCCAATTGAAGCACTTTCTGGTGGACAGCGTCAGCG    440

BSNT_04964___    441 TGTGTGGATTGCCATGGCGCTTGCGCAAGGGACGGAACTGCTTCTGCTGG    490
                     |||.||||||||.|||||.|||||.||.|..||.||.||||||.|..|||
BPUM_2990___f    441 TGTATGGATTGCGATGGCACTTGCCCAGGAAACAGAGCTGCTTTTATTGG    490

BSNT_04964___    491 ATGAACCTACAACGTATCTTGATCTTGCACATCAGCTTGAAATTCTGCAG    540
                     ||||.||.||.||||||.|.|||||.||||||||.||.||.|||||.|||
BPUM_2990___f    491 ATGAGCCGACGACGTATTTGGATCTCGCACATCAACTCGAGATTCTTCAG    540

BSNT_04964___    541 CTGCTTGACAGACTCAACAAAGAGCAAGGGCGGACGATTTTAATGGTCAT    590
                     |||.|.||..|..|.||||.|||||||||.||.||..|.||.||||||||
BPUM_2990___f    541 CTGTTAGAACGGTTAAACAGAGAGCAAGGACGAACTGTGTTGATGGTCAT    590

BSNT_04964___    591 TCATGATCTTAACCATGCAGCTCGTTTTTCTCATTATATGATCGCGCTCA    640
                     |||||||.|.||.|||||.||.||||||||||||||||||||.||.||||
BPUM_2990___f    591 TCATGATTTAAATCATGCGGCACGTTTTTCTCATTATATGATTGCCCTCA    640

BSNT_04964___    641 AAAAAGGCACGGTCATCAAGGAAGGAACTGCTCTGGAGGTCATGACACCG    690
                     |..||||.|..||.|||||.||.||.||..|||..|||||||||||    
BPUM_2990___f    641 ATCAAGGAAAAGTGATCAAAGATGGGACGCCTCATGAGGTCATGAC----    686

BSNT_04964___    691 GACATTTTAAAG-----------CAGGTATTTCAGATTGATGCCGAAATC    729
                            .||||           ||||||||.||.||||||||.||||||
BPUM_2990___f    687 -------CAAAGAGGTGCTTGGTCAGGTATTCCACATTGATGCAGAAATC    729

BSNT_04964___    730 GTGAC-TGATCCCCGTACAAATAAACCTGTATGCTTGACATATGACTTGA    778
                     || || |||.||..|.||.|||||.||..|.||.||.|||||||||||.|
BPUM_2990___f    730 GT-ACTTGACCCTAGAACGAATAAGCCGATTTGTTTAACATATGACTTAA    778

BSNT_04964___    779 TTAAAAATGAAAAAGAGCTAGTTACTGT--ATGA----    810
                     |.||..|.||||.|.||||||...||||  |||.    
BPUM_2990___f    779 TGAATCACGAAAGAAAGCTAGAAGCTGTGAATGGATAA    816


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04964 and BPUM_2990

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
