Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02781 and BPUM_2882
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_02781.1.24716.seq
# -bsequence dna-align/BPUM_2882.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02781-BPUM_2882.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02781-BPUM_2882.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02781
# 2: BPUM_2882
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 280
# Identity: 149/280 (53.2%)
# Similarity: 149/280 (53.2%)
# Gaps: 95/280 (33.9%)
# Score: 354.0
#
#
#=======================================
BSNT_02781 1 ATGAATT-TCTACTTGCACCGTTCT-TTGGAAAGCCAAATGCCAA-TCAG 47
||||||| |.||| ||.|.|..||| ||..|.|| |||||.|||| |.||
BPUM_2882 1 ATGAATTATTTAC-TGAAACAATCTCTTCAACAG-CAAATACCAATTGAG 48
BSNT_02781 48 CATTATATATATGAAGAAAGACGGA------ACGATTAG-TAAAAGAACG 90
||.||.||||||||||||.||||| |||| || .||||
BPUM_2882 49 -ATGATTTATATGAAGAAAAACGGAGAGTGCACGA--AGCGAAAA----- 90
BSNT_02781 91 ATTATTGTGAGACAGAAAAGCAAAACGAA------AATCAAAGCATTTTG 134
||.||||| ..||.|..|||||.| .|||.||||.|.|||
BPUM_2882 91 ATCATTGT------CCAACGTCAAACGGACCAGCTCATCCAAGCGTATTG 134
BSNT_02781 135 TTTTTCGAAACAACA-GATCAGAACATTT--TTATTGGACTCTATCCT-- 179
|||.|||||| ||.| |||.|||||.||| |.| .||||..|||||
BPUM_2882 135 TTTATCGAAA-AAGACGATGAGAACGTTTCGTAA--AGACTGCATCCTTG 181
BSNT_02781 180 ------CTCCTGTGATTTTGTGAGAACAAATAAGCAAAATCTCTATTCTG 223
|||| ||.||||| ||
BPUM_2882 182 CCCTTGCTCC-------------GATCAAAT-----------------TG 201
BSNT_02781 224 ---------------CAGGCCG----GTAA 234
||.|||| .|||
BPUM_2882 202 ACCCGTTCATCGGCACATGCCGTTTCATAA 231
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