Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04714 and BPUM_2863
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:30
# Commandline: needle
# -asequence dna-align/BSNT_04714___yuiG.1.24716.seq
# -bsequence dna-align/BPUM_2863___bioY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04714___yuiG-BPUM_2863___bioY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04714___yuiG-BPUM_2863___bioY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04714___yuiG
# 2: BPUM_2863___bioY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 652
# Identity: 420/652 (64.4%)
# Similarity: 420/652 (64.4%)
# Gaps: 104/652 (16.0%)
# Score: 1156.0
#
#
#=======================================
BSNT_04714___ 1 ATGAAACAACGTAAACTTCGTGCGGGAGATATGGCGCTGATT-------- 42
|||.|||| |.|||| .||| ..||||||||
BPUM_2863___b 1 ATGCAACA--GAAAAC---------AAGA---ACCGCTGATTTTGTATTA 36
BSNT_04714___ 43 ---GGCATGTTCGCCGCACTTATGGCTGTCGGGGCCAACATTACATCAGT 89
||.|||||.||.|||||.|||||..|.||.||.||.||.|||||..|
BPUM_2863___b 37 GTCGGAATGTTTGCTGCACTCATGGCGATTGGAGCGAATATCACATCCAT 86
BSNT_04714___ 90 AGCACCCTTTTTACAAGTAGCCGGCATTCCGCTTTCGATGCAGCCGTTTT 139
.|.|||.||||||||.||.|.|||.|||||.|||.||||||||||.||||
BPUM_2863___b 87 TGTACCGTTTTTACAGGTCGGCGGAATTCCACTTACGATGCAGCCTTTTT 136
BSNT_04714___ 140 TCTGTCT-CTTGGCTG--CTTTGCTTCTTGGCAGCAAACGAGC--AGCG- 183
|.||..| ||| |||| |||| |.|||||||| ||| || .|||
BPUM_2863___b 137 TTTGCGTACTT-GCTGGTCTTT--TGCTTGGCAG---ACG-GCTTGGCGC 179
BSNT_04714___ 184 ATT-GCCATGATTGTATATGCACTTG--TGGGATTGGCCGGAGCGCCTGT 230
||| ||.||||||||.||||| |||| |||.||| ||.||.||.|||||
BPUM_2863___b 180 ATTAGCGATGATTGTGTATGC-CTTGGTTGGAATT-GCTGGCGCTCCTGT 227
BSNT_04714___ 231 GTTTGCTCAATTTTCAGCAGGCTTCGCACCGTTTGCAGGGAAAAGCGGCG 280
.||.||.||.||.|||||||||||.|....|.||..|||.||||||||.|
BPUM_2863___b 228 ATTCGCACAGTTCTCAGCAGGCTTTGGGGTGATTTTAGGCAAAAGCGGTG 277
BSNT_04714___ 281 GGTTTATTATCTCATACATTCCGGCAGCATTTGC-AGCGGGATGGTTTTT 329
|.|||.|..|.||.||.|||||.||.|| .|.|| |||.||||...|.||
BPUM_2863___b 278 GTTTTGTCTTATCGTATATTCCTGCTGC-CTGGCTAGCTGGATTCATCTT 326
BSNT_04714___ 330 AGAACGAAACATTCAGCCAAGTAAAAT--TCGATTT-----CTCATTGCT 372
|||| ||| || ||| |||| |.|.||| ||..||.||
BPUM_2863___b 327 AGAA--AAA-----AG--AAG--AAATCCTGGCTTTGCCCGCTTTTTACT 365
BSNT_04714___ 373 T-CACTTAT---CGGAACGGCGATCATGTATCTCATCGGCACTACCTATA 418
| ||..||| .||.|||.|..||||||||||.|||||.||.||.||||
BPUM_2863___b 366 TGCAGCTATTGCTGGTACGACCGTCATGTATCTGATCGGAACGACTTATA 415
BSNT_04714___ 419 TGTATCTT-GCACTGAAGCTGTGGATTCATACGCCAGTGAGCT------- 460
.||| ||| |||.|.||..|||||.|..||.|.|| ||..|
BPUM_2863___b 416 CGTA-CTTCGCATTAAATGTGTGGCTGAATGCTCC---GATTTCTTATCA 461
BSNT_04714___ 461 -ACGGCACGGCTTGGGGCTTTATGATTTGGTTTATGGTAAAAGA-TACAG 508
|| |||| |||..|||||||||.|||||||||||.||||| ||| |
BPUM_2863___b 462 AAC--CACG---TGGTTCTTTATGATCTGGTTTATGGTGAAAGATTAC-G 505
BSNT_04714___ 509 CGCTGGCTGTGATACTGTCGTTTATCGCACCAGCAATCTACCGCTCT-AT 557
|..||.|..|..||||..||.|..|.|||||...|||.||.|||||| .|
BPUM_2863___b 506 CATTGACGATATTACTTGCGATGCTGGCACCTAAAATTTATCGCTCTGTT 555
BSNT_04714___ 558 TCATAAAGCAACCGGCTTTAACAGAAATC-ACA-----TATCATCTACGT 601
||| |||||.||...|||| .||||.| ||| .|||| |
BPUM_2863___b 556 TCA-AAAGCCACGTCCTTT---CGAAAACAACAAGCTGCATCA------T 595
BSNT_04714___ 602 AA 603
||
BPUM_2863___b 596 AA 597
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