Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04421 and BPUM_2671

See Amino acid alignment / Visit BSNT_04421 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:58
# Commandline: needle
#    -asequence dna-align/BSNT_04421___ytvA.1.24716.seq
#    -bsequence dna-align/BPUM_2671___ytvA1.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04421___ytvA-BPUM_2671___ytvA1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04421___ytvA-BPUM_2671___ytvA1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04421___ytvA
# 2: BPUM_2671___ytvA1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 833
# Identity:     538/833 (64.6%)
# Similarity:   538/833 (64.6%)
# Gaps:          76/833 ( 9.1%)
# Score: 1567.0
# 
#
#=======================================

BSNT_04421___      1 ATGGCTAGTTTTCAATCA--TTTGGGATACCAGGACAGCTGGAAGTCATC     48
                     ||||..||  .||.|.||  ||.||..|||.|..||||||.|||.||||.
BPUM_2671___y      1 ATGGTCAG--CTCGAACATCTTCGGCTTACAAAAACAGCTTGAACTCATA     48

BSNT_04421___     49 AAAAAAGCGCTTGATCACGTGCGAGTCGGTGTGGTAATTACAGATCCCGC     98
                     |||||||||||.|||||.|.|||..|||||||.||.||||||||.||..|
BPUM_2671___y     49 AAAAAAGCGCTAGATCATGCGCGGATCGGTGTTGTCATTACAGACCCTTC     98

BSNT_04421___     99 ACTTGAAGATAATCCTATTGTCTACGTAAATCAAGGCTTTGTTCAAATGA    148
                     ..|.||.|||||.|||||..|.||.||.|||||.||||||...||.||||
BPUM_2671___y     99 TTTAGAGGATAACCCTATCATTTATGTGAATCATGGCTTTACACACATGA    148

BSNT_04421___    149 CCGGCTACGAAACC-GAGGAAATTTTAGGAAAGAACTGCCGCTTCTTACA    197
                     |.||.||| ||||| ||.||.|||.|.||....||.||.||.|||.|.||
BPUM_2671___y    149 CTGGATAC-AAACCAGATGAGATTCTTGGGCGTAATTGTCGATTCCTTCA    197

BSNT_04421___    198 GGGGAAACACACAGATCCTGCAGAAGTGGACA------------ACATCA    235
                     .||||||.||||||||    ||.|||    ||            ||.|||
BPUM_2671___y    198 AGGGAAAGACACAGAT----CAAAAG----CAGCTCGATTTAATACGTCA    239

BSNT_04421___    236 --GAACCGCTTTACAAAATAAAGAACCGGTCACCGTTCAGATTCAAAACT    283
                       |||      |.||.||||||..|||..|.|||...|||.|..||||.|
BPUM_2671___y    240 AGGAA------TTCAGAATAAAACACCTATTACCACACAGCTAAAAAATT    283

BSNT_04421___    284 ACAAAAAAGACGGAACGATGTTCTGGAATGAATTAAATATTGATCC----    329
                     |.|||||||||||.||..|.||.|||||||||.|.|||||.|||||    
BPUM_2671___y    284 ATAAAAAAGACGGTACTTTTTTTTGGAATGAACTCAATATAGATCCTCTA    333

BSNT_04421___    330 --AATGGAAATAGAGGATAAAACGTATTTTGTCGGAATTCAGAAAGATAT    377
                       .||.|||..|||.||||||||.|.||||.|.||..||||.||.|||||
BPUM_2671___y    334 TACATTGAACAAGACGATAAAACATTTTTTATTGGCTTTCAAAAGGATAT    383

BSNT_04421___    378 CACCAAGCAAAAAGAGTATGAAAAGCTTCTCGAGGATTCCCTCAC-GGAA    426
                     .||.||.||.|||||.||||||.||||.||.||.|||| |||.|| ||||
BPUM_2671___y    384 TACGAAACAGAAAGAATATGAACAGCTCCTAGAAGATT-CCTTACAGGAA    432

BSNT_04421___    427 ATTACTGCACTTTCAACTCCTATTGTCCCGATTCGCAATGGCATTTCGGC    476
                     .|.||..|.|||||.||.||.||.|||||.||....|||||..|.||.||
BPUM_2671___y    433 GTCACCTCTCTTTCGACGCCAATCGTCCCAATCAAAAATGGTGTATCTGC    482

BSNT_04421___    477 TCTTCCGCTAGTCGGAAACCTGACAGAGGAGCGATTTAATTCCATTGTTT    526
                     |||.||.||..|.|||||.||..|.||.||.||||||.||.|||||| |.
BPUM_2671___y    483 TCTACCACTCATTGGAAAACTATCTGAAGAACGATTTGATGCCATTG-TC    531

BSNT_04421___    527 GC-ACATTGACGAATATCTTATCAACATCCAAA-GATGATTATTTGATCA    574
                     || |..||.||...|||.||| .|..||.|||| |||||||||||.||..
BPUM_2671___y    532 GCGAAGTTAACTTGTATATTA-GATGATTCAAAGGATGATTATTTAATTG    580

BSNT_04421___    575 TTGATTTATCCGGATTGGCCCAAGTGAACGAACAAAC---GGCCGACCAA    621
                     |.||..|.||.||.||...|.|.||   |||..|..|   .||.|..|..
BPUM_2671___y    581 TCGACCTTTCTGGTTTAATCGATGT---CGATGATTCCGTTGCAGCACGC    627

BSNT_04421___    622 ATTTTCAAGCTGAGCCATTTGCTGAAATTGACCGGAACTGAGTTAATCAT    671
                     |||||||||.||...|||.|.||.||.||.||.|||||.||..|.|||||
BPUM_2671___y    628 ATTTTCAAGTTGCATCATCTTCTCAATTTAACTGGAACGGAACTGATCAT    677

BSNT_04421___    672 TACCGGCATTAAGCCTGAATTGGCCATGAAAATGAATAAATTGGATGCCA    721
                     .||.||.||.||.||..|..|.||||||||||||||..|.||.|||.|..
BPUM_2671___y    678 CACAGGGATCAAACCGCAGCTTGCCATGAAAATGAAAGACTTAGATACAG    727

BSNT_04421___    722 ATTTTTCATCGCTGAAA-----ACATTTTTAAATGTAAAGGATGCCGTTA    766
                     |||     ||..|||.|     ||.|.|||.|..||.|||||.||..|.|
BPUM_2671___y    728 ATT-----TCCATGATACAATCACTTATTTGACAGTTAAGGAAGCAATCA    772

BSNT_04421___    767 ACGTGCTTCCGATTA-------------TGTAA    786
                     |.| |.||.|.||||             |||||
BPUM_2671___y    773 AAG-GATTACCATTAGCTGAAAACCCTGTGTAA    804


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04421 and BPUM_2671

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
