Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04322 and BPUM_2615
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_04322___tyrS.1.24716.seq
# -bsequence dna-align/BPUM_2615___tyrS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04322___tyrS-BPUM_2615___tyrS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04322___tyrS-BPUM_2615___tyrS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04322___tyrS
# 2: BPUM_2615___tyrS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1286
# Identity: 991/1286 (77.1%)
# Similarity: 991/1286 (77.1%)
# Gaps: 34/1286 ( 2.6%)
# Score: 3761.0
#
#
#=======================================
BSNT_04322___ 1 ATGA--CAAACTTACTTGAAGACTTATCCTTCCGCGGATTGATTCAGCAA 48
|||| ||| ||..|.|||||.|||||.||..|.|||||.|||||||||
BPUM_2615___t 1 ATGAGTCAA--TTGATGGAAGAGTTATCGTTTAGAGGATTAATTCAGCAA 48
BSNT_04322___ 49 ATGACAGATGAAGAAGGGTTAAATAAA----CAGCTGAATGAAGAAAAAA 94
...||||||||||||||.||||.|||| .||| .||||||||||
BPUM_2615___t 49 CAAACAGATGAAGAAGGTTTAACTAAATTATTAGC----AGAAGAAAAAA 94
BSNT_04322___ 95 TC-CGCTTGTACTCAGGCTTTGACCCGACAGCAGACAGCTTGCATATCGG 143
|| .|||| |||||.|||||||||||||||||.||||||||.||.||.||
BPUM_2615___t 95 TCAAGCTT-TACTCCGGCTTTGACCCGACAGCGGACAGCTTACACATTGG 143
BSNT_04322___ 144 ACACCTGCTGCCTATTTTAACACTTCGCCGTTTTCAGCTTGCGGGGCATC 193
.|||||..||||.|||||||||.|.|||.|.||.|||...||.||.||||
BPUM_2615___t 144 TCACCTATTGCCAATTTTAACATTACGCAGATTCCAGGAAGCAGGCCATC 193
BSNT_04322___ 194 ATCCGATTGCGCTTGTGGGCGGCGCGACGGGCCTCATCGGTGATCCAAGC 243
|.||||||||.|||||.|||||.||.||.||.||.|||||.||.||.|||
BPUM_2615___t 194 ACCCGATTGCTCTTGTTGGCGGGGCAACTGGACTAATCGGCGACCCTAGC 243
BSNT_04322___ 244 GGAAAAAAAGCAGAGCGTACATTAAACACTGCTGACATCGTATCCGAA-- 291
...|||||||||||.|||.||.|||||.|.||.||.||.|| .|||
BPUM_2615___t 244 TTCAAAAAAGCAGAACGTTCACTAAACCCAGCAGAAATTGT---TGAACA 290
BSNT_04322___ 292 -TGGTCCCAAAAAATCAAAAACCAGCTGTC-CAGATTTCTAGATTTTGAA 339
|||||..|.|||||||||...|||||.|| || ||||||.|||||||||
BPUM_2615___t 291 TTGGTCAGATAAAATCAAAGGACAGCTTTCTCA-ATTTCTTGATTTTGAA 339
BSNT_04322___ 340 GCAGCAGAAAACCCAGCTGTCATCGCGAACAACTTTGACTGGATCGGCAA 389
||||..||.||||||||.||.||||.|||.||||..|||||||||.||.|
BPUM_2615___t 340 GCAGGTGAGAACCCAGCCGTTATCGTGAATAACTACGACTGGATCAGCCA 389
BSNT_04322___ 390 AATGAATGTGATCGATTTCCTTCGTGACGTTGGTAAAAATTTCGGCATCA 439
|||||||||||||...|||||||||||..||||.|||||.||.||..|.|
BPUM_2615___t 390 AATGAATGTGATCACGTTCCTTCGTGATATTGGAAAAAACTTTGGTGTGA 439
BSNT_04322___ 440 ATTACATGCTGGCAAAAGATACGGTCAGCTCAAGAATTGAATCAGGCATC 489
|.|.|||||||||||||||||..||||||||..|.||||||.|||||||.
BPUM_2615___t 440 ACTTCATGCTGGCAAAAGATATCGTCAGCTCTCGGATTGAAACAGGCATT 489
BSNT_04322___ 490 TCGTACACTGAATTCAGCTACATGATTCTTCAATCTTATGATTTCTTAAA 539
||||||||.||.|||||||||.|.||.||.|||||||..||.||||||||
BPUM_2615___t 490 TCGTACACAGAGTTCAGCTACGTCATCCTGCAATCTTTAGACTTCTTAAA 539
BSNT_04322___ 540 TCTTTACAGAGACAAAAACTGTAAACTGCAAATCGGCGGAAGCGATCAGT 589
||||||||||.|..||||||||||.||||||||.||.||||||||.||||
BPUM_2615___t 540 TCTTTACAGAAATGAAAACTGTAAGCTGCAAATTGGTGGAAGCGACCAGT 589
BSNT_04322___ 590 GGGGCAATATCACAGCGGGTCTTGAACTGATCAGAAAATCAGAAGAAGAA 639
||||.|||||||||.|.||.|||||.||||||.|.||.||.||||.||||
BPUM_2615___t 590 GGGGAAATATCACATCTGGACTTGAGCTGATCCGTAAGTCTGAAGCAGAA 639
BSNT_04322___ 640 GGAGCAAAAGCGTTCGGCCTAACGATTCCGCTTGTCACAAAAGCAGACGG 689
||.||||||||.|||||..|||||||.|||||||||||.|||||||||||
BPUM_2615___t 640 GGGGCAAAAGCATTCGGTTTAACGATGCCGCTTGTCACGAAAGCAGACGG 689
BSNT_04322___ 690 CACGAAGTTCGGAAAAACGGAAGGCGGCGCGATCTGGCTTGATAAAGAAA 739
.||||||||.||||||||.|||||||||||.||||||.|.||||||||||
BPUM_2615___t 690 TACGAAGTTTGGAAAAACAGAAGGCGGCGCCATCTGGTTAGATAAAGAAA 739
BSNT_04322___ 740 AAACATCGCCATATGAATTCTATCAATTCTGGATCAACACAGACGACCGT 789
|||||||.||||||||.|||||.||||||||||||||||||||.||||||
BPUM_2615___t 740 AAACATCTCCATATGAGTTCTACCAATTCTGGATCAACACAGATGACCGT 789
BSNT_04322___ 790 GACGTTGTCAAATACTTGAAATACTTTACGTTCCTTTCAAAAGAGGAAAT 839
|||||.||.||||||||.|||||||||||||||.|.||.|||||.||.||
BPUM_2615___t 790 GACGTCGTGAAATACTTAAAATACTTTACGTTCTTATCGAAAGAAGAGAT 839
BSNT_04322___ 840 TGAAGCATACGCTGAAAAAACAGAAACGGCGCCAGAAAAACGTGAAGCGC 889
.|.|.|.||||..||||||....||||.||.||.||||||||||||||.|
BPUM_2615___t 840 CGCATCGTACGAAGAAAAAGTGCAAACAGCACCTGAAAAACGTGAAGCAC 889
BSNT_04322___ 890 AAAAACGCCTGGCAGAAGAAGTGACATCACTTGTTCACGGACGCGAGGCG 939
|....||.||.|||||.|||||.||..||||.||.||.||.||.||..|.
BPUM_2615___t 890 AGCGCCGTCTAGCAGAGGAAGTCACGACACTCGTACATGGCCGTGAATCA 939
BSNT_04322___ 940 CTGGAGCAAGCCATCAACATCTCCCAAGCGCTGTTCAGCGGCAATATTAA 989
||.||.||.||..||||||||||..|.||.||.||||..||..|.|||||
BPUM_2615___t 940 CTAGAACAGGCAGTCAACATCTCAAATGCACTATTCAAAGGTGAGATTAA 989
BSNT_04322___ 990 AGAGCTTTCTGCTCAAGACGTAAAAGTAGGCTTTAAAGATGTTCCTTCTA 1039
|...|||||.||..||||.||.||||||||||||||||||||.||.||.|
BPUM_2615___t 990 ATCTCTTTCAGCCGAAGAAGTCAAAGTAGGCTTTAAAGATGTACCATCAA 1039
BSNT_04322___ 1040 TGGAAGTTGA----CAGCACCCAAGAGCTTTCACTTGTAGATGTGTTGGT 1085
|||| || ||||||..||||..|..|||||||.|||.|..|.||
BPUM_2615___t 1040 TGGA----GAAAAGCAGCACAGAAGAATTAACACTTGTTGATCTTCTTGT 1085
BSNT_04322___ 1086 GCAATCTAAATTATCTCCTTCTAAACGCCAAGCGCGTGAAGACATCCAAA 1135
..||||.||..|.||.||.||.|||||||||||.||||||||||||..||
BPUM_2615___t 1086 AGAATCAAAGCTGTCACCATCAAAACGCCAAGCACGTGAAGACATCACAA 1135
BSNT_04322___ 1136 ACGGAGCTGTTTACATTAACGGCGAACGCCAAACAGAAATAAATTATAC- 1184
|.||.||.||||..||.|||||.||..|.|||||.| |||||...|||
BPUM_2615___t 1136 ATGGCGCAGTTTCTATCAACGGAGAGAGACAAACCG--ATAAAGACTACG 1183
BSNT_04322___ 1185 -CCTATCGGCTGAAGACCGCATCGAAAATCAATTTACTGTTCTGCGCCGC 1233
|||.||.||||||||..|.||.|||||.||||||||.||..|..|..|.
BPUM_2615___t 1184 TCCTTTCAGCTGAAGATAGAATTGAAAACCAATTTACCGTCTTAAGAAGA 1233
BSNT_04322___ 1234 GGGAAGAAAAAATACTTCCTTGTGACGTATAAATAA 1269
|||||.||.|||||.|||||||||||||||||||||
BPUM_2615___t 1234 GGGAAAAAGAAATATTTCCTTGTGACGTATAAATAA 1269
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