Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04273 and BPUM_2570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:49
# Commandline: needle
# -asequence dna-align/BSNT_04273___ytqI.1.24716.seq
# -bsequence dna-align/BPUM_2570___ytqI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04273___ytqI-BPUM_2570___ytqI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04273___ytqI-BPUM_2570___ytqI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04273___ytqI
# 2: BPUM_2570___ytqI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 969
# Identity: 715/969 (73.8%)
# Similarity: 715/969 (73.8%)
# Gaps: 54/969 ( 5.6%)
# Score: 2560.0
#
#
#=======================================
BSNT_04273___ 1 ATGAAAACAGAATTGATCAGAACCATATCATTATATGACACGATTATCTT 50
|||||||.||||.||||.|||||||||||||||||||||||.||.|||.|
BPUM_2570___y 1 ATGAAAAAAGAACTGATTAGAACCATATCATTATATGACACCATCATCAT 50
BSNT_04273___ 51 ACATAGACATGTGCGTCCTGATCCGGATGCCTACGGATCACAGTGCGGGC 100
.|||||||||||..|.||.|||||.||||||||.||||||||||||||.|
BPUM_2570___y 51 TCATAGACATGTAAGACCAGATCCTGATGCCTATGGATCACAGTGCGGCC 100
BSNT_04273___ 101 TTACGGAAATCCTGCGTGAAACATATCCTGAAAAAAATATTTTTGCGGTC 150
|||||||||||.||||||..||.|||||.|||||||||||||.||||...
BPUM_2570___y 101 TTACGGAAATCTTGCGTGCCACCTATCCAGAAAAAAATATTTATGCGACG 150
BSNT_04273___ 151 GGCACGCCTGAACCGTCCCTCTCTTTCTTATATTCCCTTGATGAGGTGGA 200
||.||.||.||.||..||||.||.||.||.|||...||||||||.|||..
BPUM_2570___y 151 GGAACACCGGAGCCAACCCTTTCATTTTTGTATGAACTTGATGAAGTGCC 200
BSNT_04273___ 201 CAATGA----AACATATGAAGGCGCACTTGTCATTGTCTGCGATACGGCA 246
..|||| .||| ||||.|||||||||||||||||||||||.||.
BPUM_2570___y 201 GGATGACGTGTACA----AAGGGGCACTTGTCATTGTCTGCGATACAGCC 246
BSNT_04273___ 247 AATCAGGAAAGAATCGACGATCAGCGTTATCCTTCA---GGCGCCAAACT 293
|||||.|.||||||.|||||||||||.|| |||| ||||..||.||
BPUM_2570___y 247 AATCAAGCAAGAATTGACGATCAGCGCTA---TTCAATGGGCGATAAGCT 293
BSNT_04273___ 294 AATGAAAATCGACCACCATCCGAACGAAGATCCATACGGTGACCTTCTCT 343
.||||||||.|||||.|||||.||.||||||||.||.|||||..|.||.|
BPUM_2570___y 294 GATGAAAATTGACCATCATCCAAATGAAGATCCGTATGGTGATTTGCTTT 343
BSNT_04273___ 344 GGGTCGATACA-AGCGCCAGCTCAGTAAGTGAAATGATTTACGAGCTGTA 392
||||.|||||| || ||.|||||.||.||.|||||||||||.||..|.||
BPUM_2570___y 344 GGGTGGATACAGAG-GCAAGCTCTGTGAGCGAAATGATTTATGAATTATA 392
BSNT_04273___ 393 TTTAGAAGGAAAAGAGCACGGCTGGAAGCTGAATACGAAAGCGGCAGAGC 442
||||||.||.|||||..|.||.|...||||||||||.||.|||||.||.|
BPUM_2570___y 393 TTTAGAGGGGAAAGAAGAAGGATATCAGCTGAATACAAAGGCGGCTGAAC 442
BSNT_04273___ 443 TGATCTACGCCGGCATTGTTGGAGATACCGGACGCTTTTTATTTCCGAAT 492
|.||.||.|||||.|||||.|||||.||.||.|||||..|.||.||.||.
BPUM_2570___y 443 TCATTTATGCCGGGATTGTAGGAGACACAGGCCGCTTCCTTTTCCCAAAC 492
BSNT_04273___ 493 ACCACGGAAAAAACATTAAAATATGCAGGCGAGCTCATTCAGTATCCATT 542
||.|||.||||.||..|.||||||||.||.||.||.|||.|.||||||||
BPUM_2570___y 493 ACGACGAAAAAGACGCTCAAATATGCTGGAGAACTGATTGAATATCCATT 542
BSNT_04273___ 543 CTCTTCCTCAGAGTTATTTAATCAATTGTATGAAACAAAACTGAATGTGG 592
.||.||.|||||..|.||.||||||||||||||.||..|.||||||||.|
BPUM_2570___y 543 TTCATCTTCAGACCTTTTCAATCAATTGTATGAGACGGATCTGAATGTCG 592
BSNT_04273___ 593 TGAAGCTTAATGGCTTTATCTTTCAAAATGTGTCTTTGTCCGAAAACGGG 642
||||..|.|||||||.|||.||||||.||.|.||||||||.||.||.|||
BPUM_2570___y 593 TGAAATTAAATGGCTATATTTTTCAACATATTTCTTTGTCAGAGAATGGG 642
BSNT_04273___ 643 GCGGCTTCTGTTTTCATCAAAAAGGATACGCTTGAA-------AAATTCG 685
|..||||||||||||||.|||.||||||...|.||| ||| ||
BPUM_2570___y 643 GTCGCTTCTGTTTTCATTAAACAGGATATATTGGAATCGTTCCAAA--CG 690
BSNT_04273___ 686 GCACAACG--GCTTCTGAAGCGTCGCAGCTTGTCGGGACGCTCGGCAATA 733
|||.|| || ||||.||.||||||||.|||||.|||||.||||
BPUM_2570___y 691 --ACAGCGCAGC-----AAGCCTCACAGCTTGTTGGGACACTCGGAAATA 733
BSNT_04273___ 734 TCTCAGGTATTCGCGCCTGGGTGTTTTTCGTAGAAGAAGACGATCAAATC 783
|..||||.|||...||.|||||.|||||.||.||||||.|.|||||.||.
BPUM_2570___y 734 TTGCAGGGATTAAGGCATGGGTCTTTTTTGTGGAAGAAAATGATCAGATT 783
BSNT_04273___ 784 AGAGTCAGATTCCGTTCGAAGGGGCCT-GTCATTAACGGAC--TTGCCCG 830
.|.||.||||||||.||||| .|||.| |||||||| .|| ||||...
BPUM_2570___y 784 CGTGTGAGATTCCGCTCGAA-AGGCGTCGTCATTAA--TACCATTGCGAA 830
BSNT_04273___ 831 GAAATATAACGGCGGAGGGCATCCGTTAGCTTCAGGCGCCTCTATTTACA 880
.||||||.|.|||||.||.||.|||.|.||..|.||.||.||||||||..
BPUM_2570___y 831 AAAATATCATGGCGGCGGCCACCCGCTTGCAGCTGGAGCGTCTATTTATG 880
BSNT_04273___ 881 GCTGGG--ATGAAGCTGATCGGATTTTAGC-TGATCTGGAAACATTATGT 927
..|||| ||| ||.|||..|||||| || ||||.|.|||..|.|||||
BPUM_2570___y 881 ATTGGGCCATG--GCAGATGAGATTTT-GCGTGATTTAGAAGAAGTATGT 927
BSNT_04273___ 928 AAA----GAACACGAGTAG 942
||| .|.||.||
BPUM_2570___y 928 AAATCATCATCATGA---- 942
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