Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04153 and BPUM_2505
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:40
# Commandline: needle
# -asequence dna-align/BSNT_04153___lysC.1.24716.seq
# -bsequence dna-align/BPUM_2505___lysC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04153___lysC-BPUM_2505___lysC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04153___lysC-BPUM_2505___lysC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04153___lysC
# 2: BPUM_2505___lysC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1288
# Identity: 918/1288 (71.3%)
# Similarity: 918/1288 (71.3%)
# Gaps: 119/1288 ( 9.2%)
# Score: 3208.0
#
#
#=======================================
BSNT_04153___ 1 ATGGGTCTTATTGTACAAAAATTCGGAGGCACTTCCGTCGGCTCAGTC-G 49
|||||.||.||||||||||||||.||.||.||.||.||.||.|| |.| |
BPUM_2505___l 1 ATGGGACTAATTGTACAAAAATTTGGCGGAACGTCTGTTGGATC-GACAG 49
BSNT_04153___ 50 AAAAAATTCAAAATGCGGCAAACCGCGCAATTGCAGAAAAACAGAAAGGC 99
|||||||||..|||||.|||.|..|.|..||.||.||| .|.|||||
BPUM_2505___l 50 AAAAAATTCGCAATGCTGCAGAAAGGGTCATCGCTGAA----CGCAAGGC 95
BSNT_04153___ 100 ----CATCAAGTCGTTGTCGTCGTTTCAGCAATGGGAAAATCCACTGACG 145
|||.|.||.|||||.||.||.||.||||||||.|||||.||.||
BPUM_2505___l 96 TGGACATGACGTGGTTGTGGTTGTGTCGGCAATGGGTAAATCAACGGA-- 143
BSNT_04153___ 146 AATTGGTC----AG-CCTTGCAAAAGCTATTTCTGACCAGCCGAGCAAAC 190
||.|| || |||.||.||||...|..|.||.||.||||||||..
BPUM_2505___l 144 ---TGTTCTAGTAGACCTAGCGAAAGAACTCACAGATCATCCGAGCAATA 190
BSNT_04153___ 191 GCGAAATGGATATGCTGCTGGCGACAGGCGAGCAGGTCACGATTTCACTC 240
|.|||||||||||||||||.||.||.||.|||||.||.||.||||| ||.
BPUM_2505___l 191 GAGAAATGGATATGCTGCTCGCAACTGGAGAGCAAGTGACCATTTC-CTT 239
BSNT_04153___ 241 CTT-TCAATGGCATTGCAGGAAAAAGGCTATGATGCTGTGTCTTATACTG 289
.|| .|.|||||..|.||.|.|||||||||||||||..|.||.|.|||.|
BPUM_2505___l 240 ATTAACGATGGCGCTACAAGCAAAAGGCTATGATGCCATTTCCTTTACAG 289
BSNT_04153___ 290 GCTGGCAGGCGGGAATCCGTACGGAGGCCA--TTCACGGAAACGCCAGAA 337
||||||||||.||.||....||.||| || |.||.||.|||||.||||
BPUM_2505___l 290 GCTGGCAGGCTGGTATGAAAACAGAG--CAAGTACATGGTAACGCAAGAA 337
BSNT_04153___ 338 TTACAGATATCGACACTTCGGTTTTAGCAGACCAGCTTGAAAAAGGA--- 384
|....|||||.|| |..|.|| ||..|.|||.||||
BPUM_2505___l 338 TCGTTGATATTGA---------TGAATCA----AGAGTAAAAGAGGAATT 374
BSNT_04153___ 385 ---------AAAA----TTGTCATTGTTGCAGGATTCCAAGGCATGACAG 421
|||| ||||| ||.|||||||||||||||||..|||
BPUM_2505___l 375 AAATGCTGGAAAAGTGGTTGTC---GTGGCAGGATTCCAAGGCATTGCAG 421
BSNT_04153___ 422 AGGATTGTG-AAATTACGACATTGGGCCGGGGCGGTTCAGATACAACAGC 470
|.|||| || |.||.||.||..|.||.||.||.||.||||||||||||||
BPUM_2505___l 422 ATGATT-TGCATATCACAACGCTTGGACGTGGTGGATCAGATACAACAGC 470
BSNT_04153___ 471 AGTTGCTTTGGCTGTCGCTTTAAAAGCTGATAAATGTGACATATACACAG 520
.||.||..|.||||..||..|||||||.|||||||||||.||.|||||||
BPUM_2505___l 471 TGTGGCACTTGCTGCTGCACTAAAAGCAGATAAATGTGATATTTACACAG 520
BSNT_04153___ 521 ACGTGCCAGGCGTGTTTACAACTGATCCGCGCTATGTGAAATCAGCG--- 567
||||.|||||.|||||||||||.||||||||.||||| |.|.|||
BPUM_2505___l 521 ACGTTCCAGGTGTGTTTACAACAGATCCGCGTTATGT---ACCGGCGGCA 567
BSNT_04153___ 568 AGAAAACTTGCGGGCATCTCATACGATGAAATGCTTGAGCTTGCCAATTT 617
.||||||||||.||.||.|||||||||||.|||||.||.||.||.|||||
BPUM_2505___l 568 CGAAAACTTGCAGGTATTTCATACGATGAGATGCTCGAACTGGCTAATTT 617
BSNT_04153___ 618 AGGCGCCGGTGTTCTT-CATCCGAGAGCAGTTGAGTTCGCGAAAAATTAC 666
|||.||.||.| |||| |||||||||||.|||||.||.|||||||||||.
BPUM_2505___l 618 AGGAGCTGGCG-TCTTGCATCCGAGAGCTGTTGAATTTGCGAAAAATTAT 666
BSNT_04153___ 667 CAAGTGCCGTTAGAAGTGCGTTCAAGTACAGAAACCGAAGCGGGAACATT 716
|||||.||..|||||||.|||||.||||..||||..|||.||||.||.||
BPUM_2505___l 667 CAAGTCCCACTAGAAGTCCGTTCTAGTATTGAAAATGAATCGGGTACGTT 716
BSNT_04153___ 717 AATTGAGGAGGAATCATCCATGGAACAGAATTTAATTGTCAGAGGCATTG 766
|||||||||||||||||||||||||||.||||||.|.|||||||||||||
BPUM_2505___l 717 AATTGAGGAGGAATCATCCATGGAACAAAATTTAGTCGTCAGAGGCATTG 766
BSNT_04153___ 767 CATTTGAAGATCAAATCACAAGAGTAACCATTTACGGGCTGACTAGCGGT 816
|||||||.|||||.||.|||.|.||.||..|.|.|||.||..|.||||||
BPUM_2505___l 767 CATTTGAGGATCAGATTACACGCGTGACGGTGTGCGGTCTTTCAAGCGGT 816
BSNT_04153___ 817 CTGACAACTTTGTCTACTATTTTTACGACACTTGCCAAAAGAAACATAAA 866
||.||.||.|||||.||.||.||||||||||||||.|||..|||.||.||
BPUM_2505___l 817 CTCACCACATTGTCGACCATCTTTACGACACTTGCGAAACAAAATATCAA 866
BSNT_04153___ 867 CGTGGATATCATTATCCAAACGCAGGCCG-----AGGAC----AAGAC-T 906
.|||||||||||.|| .|||.||| ||.|| .|||| |
BPUM_2505___l 867 TGTGGATATCATCAT------TCAGTCCGTCACAAGCACCAATCAGACGT 910
BSNT_04153___ 907 GGAATTTCCTTCTCTGTCAAAACAGAAGA--TGCAGATC--AAACCGTTG 952
.| ||.||.||||||||.|||||.||.|| || || ||||.||||
BPUM_2505___l 911 CG-ATCTCTTTCTCTGTGAAAACGGATGATTTG----TCTAAAACAGTTG 955
BSNT_04153___ 953 CGGTGCTTGAAGAGTATAAAGACGCGCTGGAATTTGAGAAAATCGAGACA 1002
..|||.|.|||||.||.||||..||.||.|..|.|||..|.|||||||||
BPUM_2505___l 956 AAGTGTTAGAAGAATACAAAGGAGCACTTGGCTATGAACAGATCGAGACA 1005
BSNT_04153___ 1003 GAAAGCAAATTGGCTAAAGTATCCATTGTTGGATCCGGCATGGTCTCAAA 1052
|||||||||||.||.||||||||.||.||||||||.||.|||||||||||
BPUM_2505___l 1006 GAAAGCAAATTAGCCAAAGTATCTATCGTTGGATCGGGTATGGTCTCAAA 1055
BSNT_04153___ 1053 TCCTGGTGTAGCGGCTGAAATGTTTGCTGTACTGGCGCAAAAAAACATTT 1102
|||.||.|||||.||.||||||||.|||||..|.|||.|||||.||||..
BPUM_2505___l 1056 TCCAGGCGTAGCCGCAGAAATGTTCGCTGTGTTAGCGGAAAAAGACATAC 1105
BSNT_04153___ 1103 TAATCAAAATGGTCAGCACTTCTGAAATCAAAGTGTCAACAGTCGTAAG- 1151
.|.|.|||||||||||.||.||||||||||||||.||||||||.||..|
BPUM_2505___l 1106 AAGTGAAAATGGTCAGTACGTCTGAAATCAAAGTCTCAACAGTGGTTGGC 1155
BSNT_04153___ 1152 CGAAAATGAC---ATGGTGAAAGCAGTCGAGTCGCTTCACGATGCATTTG 1198
|| |||| |||||.||||||||.||..|.||.||.|||||.||||
BPUM_2505___l 1156 CG----TGACGATATGGTCAAAGCAGTAGAAGCACTGCATGATGCGTTTG 1201
BSNT_04153___ 1199 AGCTTTCAAA---------ACACCCTTCAGCTGTGTAA 1227
|..|.||||| .||..|||.|
BPUM_2505___l 1202 ATTTATCAAAGGTAGCTGCCCATTCTTAA--------- 1230
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