Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04065 and BPUM_2441
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:34
# Commandline: needle
# -asequence dna-align/BSNT_04065___mreD.1.24716.seq
# -bsequence dna-align/BPUM_2441___mreD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04065___mreD-BPUM_2441___mreD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04065___mreD-BPUM_2441___mreD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04065___mreD
# 2: BPUM_2441___mreD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity: 355/540 (65.7%)
# Similarity: 355/540 (65.7%)
# Gaps: 42/540 ( 7.8%)
# Score: 1077.5
#
#
#=======================================
BSNT_04065___ 1 GTGAAACGTTTCCTTCTCCCTTTCGTTATGATGCTTGTTTTTTCTGCG-- 48
||||.||||.|||||||..|||||||.|||.|| |||.|||.||
BPUM_2441___m 1 GTGAGACGTGTCCTTCTTGCTTTCGTCATGTTG-----TTTATCTTCGTA 45
BSNT_04065___ 49 ---GAAAGCATTTTTACAGATTTGGTGCATTTTCCTTTCGTTACAGATGA 95
||.||.||||||...|||.|.|||.|..|.||.||.|||.||||..|
BPUM_2441___m 46 TTTGACAGTATTTTTGTCGATCTAGTGAAGCTCCCATTTGTTTCAGACAA 95
BSNT_04065___ 96 CCAAGTGCTCGCCCCGCGTTTTTTGATGCTTGTATTGATATTCATGTCGG 145
.|||.|..|.||.||.|.|||..|..|.||.|.|.|..||||.|||.|||
BPUM_2441___m 96 TCAAATTTTAGCTCCTCATTTCATCTTACTCGCACTCGTATTTATGACGG 145
BSNT_04065___ 146 CTTTTATCAACCAAAAACACGCGATGATTTACGGATTTATTTTTGGTTTT 195
|||||.|.||.||||||.|.|...||||||.|||.|||||.|||||..||
BPUM_2441___m 146 CTTTTGTGAATCAAAAATATGGTGTGATTTTCGGTTTTATCTTTGGACTT 195
BSNT_04065___ 196 CTATATGACATGAACTATACAAGTCTATTAGGCGTTTACATGTTTGGTTT 245
.|||||||.||....||||||.|..||.|.||.|||.|.||||||||.||
BPUM_2441___m 196 TTATATGATATTTCGTATACAGGCATACTTGGTGTTCATATGTTTGGCTT 245
BSNT_04065___ 246 TGCAGGGCTATGCTATTTGGCT-TCAAAAGCGTTTAAAGTGTTACATACA 294
||.||.|||.|||||||| ||| .|.|||||.||||||||.| |.||
BPUM_2441___m 246 TGGAGCGCTCTGCTATTT-GCTAGCGAAAGCCTTTAAAGTTT----TGCA 290
BSNT_04065___ 295 AACGCATTTGTAGTGATATTGATAGCAGTTCTGGCTGT---------CTG 335
||||.||.||| ||.||.|.| |||..|||| |||
BPUM_2441___m 291 AACGAATATGT-----TAGTGGTCG----TCTTTCTGTCGATTATTGCTG 331
BSNT_04065___ 336 TCTGC----TCGAATTTTACGTATTCGGCATTCAGTCTTTGATTCATAAA 381
|.|.| |.||.|||||.||.|.||||.||||..|....|||||...|
BPUM_2441___m 332 TTTCCGTAATGGAGTTTTATGTGTACGGCGTTCAAGCGACAATTCAACCA 381
BSNT_04065___ 382 GACATTATGACGTTTA--ACGGATTTGTGCTTGACCGGTTTATACCGACA 429
|..||||||.|||||| ||| |.|||..|.||.||.|||||.||.||.
BPUM_2441___m 382 GGGATTATGCCGTTTAATACG--TATGTCATCGAACGCTTTATTCCAACG 429
BSNT_04065___ 430 ATTTTATTAAATATTGCAGCAGCTCTTATTCTTGTTCTGCCATTTAGATT 479
|||.|.|||||||.|||.||..||||.||.||||||.||||..||||..|
BPUM_2441___m 430 ATTCTTTTAAATACTGCTGCGTCTCTCATACTTGTTGTGCCGCTTAGGCT 479
BSNT_04065___ 480 GTTTTTTATGAGTCTAAAGAAAGAATTGAGAGATGAGTAA 519
.|||||.||.|...|.||..|||||.|||..||.||.|||
BPUM_2441___m 480 CTTTTTCATCAACATGAAACAAGAACTGATCGACGAATAA 519
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