Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03997 and BPUM_2395

See Amino acid alignment / Visit BSNT_03997 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:29
# Commandline: needle
#    -asequence dna-align/BSNT_03997___yrvM.1.24716.seq
#    -bsequence dna-align/BPUM_2395___yrvM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03997___yrvM-BPUM_2395___yrvM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03997___yrvM-BPUM_2395___yrvM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03997___yrvM
# 2: BPUM_2395___yrvM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 766
# Identity:     600/766 (78.3%)
# Similarity:   600/766 (78.3%)
# Gaps:           2/766 ( 0.3%)
# Score: 2324.0
# 
#
#=======================================

BSNT_03997___      1 TTGTTACACCAGTTTTCACGCAATGAATTAGCTATCGGAAAAGAAGGCCT     50
                     ||||||||.|||||||||.|.||.||..|.||.||.||.||.||||| ||
BPUM_2395___y      1 TTGTTACATCAGTTTTCAAGAAACGAGCTTGCCATTGGCAAGGAAGG-CT     49

BSNT_03997___     51 TGAA-ACGCTGAAAAACAGCACAGTTGCTGTGCTTGGAGTCGGAGGAGTT     99
                     |.|| |...|.||||||||.||||||||.||||||||.||.||.||.|||
BPUM_2395___y     50 TAAATATATTAAAAAACAGTACAGTTGCAGTGCTTGGTGTGGGCGGCGTT     99

BSNT_03997___    100 GGGTCGTTCGCGGCGGAAGCGCTCGCGCGGTCAGGCGTCGGCCGCATTCT    149
                     ||.||.||.||.|..||.||.|||||.||.||||||||.|||||.|||.|
BPUM_2395___y    100 GGCTCATTTGCAGTCGAGGCACTCGCTCGTTCAGGCGTTGGCCGTATTGT    149

BSNT_03997___    150 GCTTGTCGACAAAGATGATGTCGACATTACAAATGTAAACCGTCAGCTTC    199
                     .|||||.||.|||||||||.|.||.||||||||||||||.||||||||.|
BPUM_2395___y    150 TCTTGTTGATAAAGATGATATTGATATTACAAATGTAAATCGTCAGCTGC    199

BSNT_03997___    200 ACGCGCTGCTTTCAACTGTCGGACAGCCGAAAGTTGATTTAATGAAGGCG    249
                     ..||..||||||||||.||.||.|||||.||.|||||.||||||.|||||
BPUM_2395___y    200 CAGCATTGCTTTCAACAGTGGGTCAGCCAAAGGTTGACTTAATGCAGGCG    249

BSNT_03997___    250 CGGATCGCAGACATTAACCCGGAGTGTGAAGTAATCTCGTTAAAAATGTT    299
                     .|.|||||.||.|||||.||.||.||||||||..|..||.|.||.|||||
BPUM_2395___y    250 AGAATCGCTGATATTAATCCAGAATGTGAAGTGGTTGCGCTCAAGATGTT    299

BSNT_03997___    300 CTATACGGAGGAAACGTATGAGCAGTTTTTTGACTATGATCTTGACTATG    349
                     .|||||.||||||||.||||||||.||||||||.|||...|||||.||||
BPUM_2395___y    300 TTATACAGAGGAAACATATGAGCAATTTTTTGAATATCCGCTTGATTATG    349

BSNT_03997___    350 TCATTGATGCGTCAGACACCATTTGTTATAAAATTCATTTAATGAAAGAA    399
                     ||||.|||||.|||||.||.|||...|||||||||||||||||||||||.
BPUM_2395___y    350 TCATCGATGCATCAGATACGATTCACTATAAAATTCATTTAATGAAAGAG    399

BSNT_03997___    400 TGTCTAAAACGGGATATTCCGCTCATCTCCAGCATGGGTGCTGCAAATAA    449
                     |||||.|||||.|.|.|.....||||.||.||.|||||.||||||||.||
BPUM_2395___y    400 TGTCTGAAACGAGGTGTGAACATCATTTCGAGTATGGGAGCTGCAAACAA    449

BSNT_03997___    450 AACGGATCCGACACGCTTCCAAATCGCTGATATCTCAAAAACGCACACTG    499
                     |||.||||||||.||||||.||||.|.|||.||.||||||||.||.||.|
BPUM_2395___y    450 AACAGATCCGACTCGCTTCAAAATTGATGACATTTCAAAAACCCATACCG    499

BSNT_03997___    500 ATCCAATTGCGAAGGTCGTCCGTACGAAATTACGCAAAGAGGGGATCAAA    549
                     |.||||||||.||.|||||..|.|||....||||||||||.|||||....
BPUM_2395___y    500 ACCCAATTGCAAAAGTCGTGAGAACGCGTCTACGCAAAGAAGGGATTCGT    549

BSNT_03997___    550 AAAGGCGTCCAAGTGATTTTCTCTGATGAAAGCCCGATTGTCATTCGGGA    599
                     |||||..|..||||.|||||||||||||||||.||||||||.|||||.||
BPUM_2395___y    550 AAAGGAATTGAAGTCATTTTCTCTGATGAAAGTCCGATTGTGATTCGCGA    599

BSNT_03997___    600 AGATGTCAGAAAAGAAGTGGGAAATGACGAAGCGAAAATCCGTAAAGCAA    649
                     ||||||.|||||||||||.||||||||.||||||||.||.||.||.|||.
BPUM_2395___y    600 AGATGTTAGAAAAGAAGTTGGAAATGATGAAGCGAAGATTCGCAAGGCAC    649

BSNT_03997___    650 AAATGCCGCCTTCCTCTAATGCTTTTGTGCCGTCAGTTGCAGGTTTGATT    699
                     ||||||||||.||.||.|||||.||.||.||.||.||||||||..||||.
BPUM_2395___y    650 AAATGCCGCCATCTTCCAATGCATTCGTCCCATCTGTTGCAGGACTGATC    699

BSNT_03997___    700 ATGGGCGGACATGTTGTCATGGATCTTTTGAAAGACATAGAAATCAAACG    749
                     |||||.||.|||||..|.|||.|.|||||||||||.||...|||.|.|||
BPUM_2395___y    700 ATGGGTGGTCATGTGATTATGCAGCTTTTGAAAGATATTCCAATTACACG    749

BSNT_03997___    750 TGTGAAGGATAAATAA    765
                     ||||||||||||||||
BPUM_2395___y    750 TGTGAAGGATAAATAA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03997 and BPUM_2395

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
