Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03778 and BPUM_2267
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:19
# Commandline: needle
# -asequence dna-align/BSNT_03778___yqfD.1.24716.seq
# -bsequence dna-align/BPUM_2267___yqfD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03778___yqfD-BPUM_2267___yqfD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03778___yqfD-BPUM_2267___yqfD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03778___yqfD
# 2: BPUM_2267___yqfD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1258
# Identity: 877/1258 (69.7%)
# Similarity: 877/1258 (69.7%)
# Gaps: 128/1258 (10.2%)
# Score: 2903.0
#
#
#=======================================
BSNT_03778___ 1 GTGAAAAATAAATGGCT-GTCTTTTTTTTCGGGTAAGGTCCAG-CTTGAA 48
|||||.|||||||||.| |.||.||||.|.|| ||| .|.|||
BPUM_2267___y 1 GTGAAGAATAAATGGTTCGCCTATTTTATTGG--------CAGAGTGGAA 42
BSNT_03778___ 49 TTG------ACGGGAAGAGGGATTGAGCGGCTCCTTAATGAATGCACAAG 92
.|| |.|||||..||.||||||||||||.|.|||||.|||||.||
BPUM_2267___y 43 GTGGAGATCAAGGGAAACGGCATTGAGCGGCTCATCAATGAGTGCACGAG 92
BSNT_03778___ 93 ACAGGGGATTCCGGTCTTTCATGTCA--------AAAAAAAGAAAGAAGC 134
|||||.|||..|..|.|||||.||.| |||.|.||
BPUM_2267___y 93 ACAGGAGATCACAATGTTTCAAGTGATCCGCCGTAAAGACAG-------- 134
BSNT_03778___ 135 CGTATCG-TTATATATACAGCT--TCAGGATGTACATGCCTTTCGGCGGG 181
||| .|| ||||.|||.| ||| ||| |||||||||| |||||
BPUM_2267___y 135 CGT-GCGCTTATTTATTC-GCTTATCA-GATGTACATG-CTTTC------ 174
BSNT_03778___ 182 TGAGAAGTAAATTTAAAT------GTAAAGCCCG---ATTTATCCATC-- 220
.||.|||||.|...|.|| |||| |..| |||| ||||
BPUM_2267___y 175 AGAAAAGTACAAAGACATCATGAGGTAA--CATGTTCATTT---CATCAA 219
BSNT_03778___ 221 -GGAAGGGTTTTCCCTTCCTGTTGCTGAAATCAAAGCTGAATATAGGGTT 269
.||||||.|||||.|||||..|.||....||||.|..||||||.|||||
BPUM_2267___y 220 AAGAAGGGATTTCCGTTCCTTCTCCTATGGTCAAGGAAGAATATTGGGTT 269
BSNT_03778___ 270 TACGATCGGTTTTGCGATTTTTTTCATCCTTTT------GTTTTT---GC 310
|||..|.||..|||.| ||||||| | |.|.|| ||
BPUM_2267___y 270 TACCCTTGGGATTGTG--TTTTTTC-------TAGCGACGATATTGGCGC 310
BSNT_03778___ 311 TGTCCAATATGGTGTGGAAAATTGATGTGACAGGCGCTAAGCCTGAAACA 360
|.||.||.||||||||||||||||||.|.|.|||.||.||.||.|||||.
BPUM_2267___y 311 TTTCGAACATGGTGTGGAAAATTGATATTAAAGGAGCCAATCCAGAAACT 360
BSNT_03778___ 361 GAACATCAAATGAGGCAGCATCTTA-ATGAAATCGGCGT-CAAAAAGGGC 408
||||||||||||||..||||| ||| |.||.||.||.|| |||||| |||
BPUM_2267___y 361 GAACATCAAATGAGAAAGCAT-TTAGACGAGATTGGGGTACAAAAA-GGC 408
BSNT_03778___ 409 CGTCTGCAGTTTTTAATGATGTCGCCCGAAAAAATACAGAAATCATTAAC 458
|||.|.||||||.|||||....|.||.||||||||.||.||||||.|.||
BPUM_2267___y 409 CGTTTTCAGTTTCTAATGGGAACACCTGAAAAAATTCAAAAATCACTGAC 458
BSNT_03778___ 459 CAATGG--AATAGACAA--TATCACTTGGGTCGGAGTTGATCTGAAGGGG 504
| | ||||..||| .||.||.|||||.||.|||||.||.||.||.
BPUM_2267___y 459 C----GCCAATATTCAAAGCATTACATGGGTTGGCGTTGAACTAAACGGT 504
BSNT_03778___ 505 ACGACCATTCACATGAAAGTTGTGGAGAAAAATGAGCCCGAAAAAGAAAA 554
||.||..||||.||||||||||||||.||||||||.||.|||||||||||
BPUM_2267___y 505 ACAACATTTCAAATGAAAGTTGTGGAAAAAAATGAACCGGAAAAAGAAAA 554
BSNT_03778___ 555 GTATGTTAGCCCGC-GCAATATTGTCGCCAAAAAGAAAGCAACCATTACG 603
.|||...||.||.| || |||||||.|||||.|||||.||...|||.|||
BPUM_2267___y 555 ATATACGAGTCCACAGC-ATATTGTGGCCAAGAAGAAGGCGGTCATCACG 603
BSNT_03778___ 604 AGAATGTTTGTGCAAAAAGGACAGCCCATGGCCGCCATACACGATCATGT 653
|||||||.||||.||||||||.||||..|.|||||..|..|.||.||||
BPUM_2267___y 604 AGAATGTATGTGGAAAAAGGAGAGCCGCTTGCCGCAGTTGATGAACATG- 652
BSNT_03778___ 654 TGAA-AAGGGGCAGCTGCTTGTTTCGGGACTGATCGGCAGCGAAGACCAT 702
|||| ||.||.||..||||.||.||.||.||.|||||||||||||||
BPUM_2267___y 653 TGAAGAAAGGACAAATGCTCGTCTCTGGCCTCATCGGCAGCGAAGAC--- 699
BSNT_03778___ 703 CAGCAGGAA---GTCGCCTCAAAAGCAGAAATTTACGGAGAAACCTGGTA 749
|||||..|| ||||...|.|||||..|||||||.||||||||.||||.
BPUM_2267___y 700 CAGCAAAAAACGGTCGGTGCTAAAGCGAAAATTTATGGAGAAACGTGGTT 749
BSNT_03778___ 750 TAGATCAGAAGTGACAGTCCCGCTTGAAACATTATTTAACGTCTATACGG 799
..|.||.|||||..|.|||||.|||..|||||..|||.|.||||.|||||
BPUM_2267___y 750 CCGTTCTGAAGTTTCTGTCCCTCTTCGAACATCTTTTGATGTCTTTACGG 799
BSNT_03778___ 800 GCAAAGTAAGGACAAAGCACAAGCTTT---CTTTTGGTTCTTTGGCAATC 846
|.|||.|.|.|||||||||||||||.| |.|||||...|| ||.|.
BPUM_2267___y 800 GTAAAATGAAGACAAAGCACAAGCTCTCCGCATTTGGAGGTT---CAGTG 846
BSNT_03778___ 847 CCGATCTGGGGGATGACGTTTAAAAAAGAGGAATTGAAGCATCCAAAAAC 896
||..|.|||||..|..|.|||||||||||.||.||.|||||.||||||||
BPUM_2267___y 847 CCATTTTGGGGCTTTTCCTTTAAAAAAGATGATTTTAAGCAGCCAAAAAC 896
BSNT_03778___ 897 AGAACAAGAAAAGCATTCGCTTCATTTTCTCGGATTTAAGCTCCCTGTAT 946
||||..||||...||..|.||.|||||..|..|.||..|||||||..|.|
BPUM_2267___y 897 AGAAACAGAAGTTCACCCACTCCATTTCTTAAGTTTCCAGCTCCCATTTT 946
BSNT_03778___ 947 CCTATGTCAAAGAGCAAACGA---GAGAAAGTGAAGAGGCTTTG---CGA 990
||||||..|||| |||||| |.||||||||| .|..|| |||
BPUM_2267___y 947 CCTATGAAAAAG---AAACGACACGCGAAAGTGAA---ACAATGAACCGA 990
BSNT_03778___ 991 AAATATACGAAAGAAGAAGCAGTTCAAGAAGGCATTAAATTGGGTAAACA 1040
|.|||.||.||..|||||||||||||||.|||.||||||.||||||||.|
BPUM_2267___y 991 ACATACACAAATAAAGAAGCAGTTCAAGCAGGGATTAAAATGGGTAAAAA 1040
BSNT_03778___ 1041 GGATGTAGAGGATAAAATAGGCGAAAACGGCGAGGTGAAAAGTGAAAAAG 1090
.||..||||.||.||..||||..|||..||.|||||||||||||||||||
BPUM_2267___y 1041 AGAATTAGAAGAGAAGCTAGGTCAAACAGGAGAGGTGAAAAGTGAAAAAG 1090
BSNT_03778___ 1091 TTTTGCACCAGACTGTTGAGAATGGTAAAGTAAAGTTGATTATTCTCTAC 1140
||||||||.||||....|.||||||||||||.|||||.||.||.||.|||
BPUM_2267___y 1091 TTTTGCACGAGACAACAGGGAATGGTAAAGTTAAGTTAATCATCCTTTAC 1140
BSNT_03778___ 1141 CAAGTTATAGAAGATATCGTTCAAACCACACCTATTG-TCAGGGAGACTG 1189
|||||.|||||||||||.||||||.|.|||||||||| |||||||||||
BPUM_2267___y 1141 CAAGTAATAGAAGATATTGTTCAACCAACACCTATTGTTCAGGGAGACT- 1189
BSNT_03778___ 1190 AAGAATGA 1197
||
BPUM_2267___y 1190 -AG----- 1191
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