Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03714 and BPUM_2217
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:14
# Commandline: needle
# -asequence dna-align/BSNT_03714___yqgP.1.24716.seq
# -bsequence dna-align/BPUM_2217___yqgP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03714___yqgP-BPUM_2217___yqgP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03714___yqgP-BPUM_2217___yqgP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03714___yqgP
# 2: BPUM_2217___yqgP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1723
# Identity: 972/1723 (56.4%)
# Similarity: 972/1723 (56.4%)
# Gaps: 383/1723 (22.2%)
# Score: 2373.5
#
#
#=======================================
BSNT_03714___ 1 ----ATGTTTTTGCTGGAGTATACATATTGGAAAATTGCGGCGCACCTGG 46
||||..|.|.| |||.| ||.||||..|.||| .||.
BPUM_2217___y 1 ATGAATGTCATAGAT--AGTTT--ATTTTGGCGAGTTG--------TTGA 38
BSNT_03714___ 47 TGAAT--------AGCGGGT-----ATGGCGTCATACAAGCCGGT----- 78
||||| |..|||| |||| .||| |||.|.||
BPUM_2217___y 39 TGAATTAAGACAAAAAGGGTACGAGATGG-TTCA---AAGTCCGTATCCA 84
BSNT_03714___ 79 GAGTCAGATGAAATATGGCTGGAAGCGCCGGAC--AAGTCCTCTC----- 121
|| |||||||||||...|.|||||.|| || || |||
BPUM_2217___y 85 GA---AGATGAAATATTTTTCGAAGCACC--ACGAAA-----CTCAGGAT 124
BSNT_03714___ 122 ATGATCTAGTTCGTCTTTATAAGCACGATCTTGATTTCCGTCAAGAAATG 171
|||||||..|.|||||.||||...|.|||.|..||||..|.||.||.||.
BPUM_2217___y 125 ATGATCTTATCCGTCTATATAGAAAAGATGTGAATTTTAGACAGGAGATC 174
BSNT_03714___ 172 GTTAGAGACATCGAAGAGCAGGCCGAACGAGTAGAACGAGTCAGACATCA 221
|||.||||.||.||||||||| |||..|.|.|.|| ||||
BPUM_2217___y 175 GTTCGAGATATTGAAGAGCAG-----ACGTATCGGATGA-------ATCA 212
BSNT_03714___ 222 ATTGGGCAGACGAAGG--ATG---AAGCTG---CTGAATGTGTT------ 257
|.|| ||| .||| ||| ||.|.| ||..||.|.||
BPUM_2217___y 213 ACTG---AGA--GAGGCCATGCGTAAACGGTCTCTTCATCTCTTACAGCT 257
BSNT_03714___ 258 ---TTTTTCAACGGAAGCC--CCTGTTGATGACTGGGAAGAGAT------ 296
.|||.||.|.|| || |||||.|||||.|||||.||..|
BPUM_2217___y 258 CCAATTTACAGCTGA--CCATCCTGTAGATGATTGGGAGGACCTAAACGG 305
BSNT_03714___ 297 -----TGCAAAAAAAATGTTTGAGAAGGGAACTGTGTCAGTTG-AGCCGG 340
.|||||||.| |.|.||||..||.||..||..|| |
BPUM_2217___y 306 TCAGCCGCAAAAACA-----TCAAAAGGTGACCGTTACACCTGTA----- 345
BSNT_03714___ 341 CGATCGTTA--GAGGAACGATGCTTCGAGATGATCTTCA----------- 377
||| || |||| ||||..||||||
BPUM_2217___y 346 ------TTACTGA------ATGC----AGATACTCTTCAACACGACGTGA 379
BSNT_03714___ 378 ---AGCGGTTTTTCCA--------TCATTTCGTC-----CAGAAGATTGT 411
||| |.|| |||.|.|.|| |||..|| |||
BPUM_2217___y 380 ACGAGC------TGCAAAAATGGCTCAATACATCGCTCACAGTGGA-TGT 422
BSNT_03714___ 412 A-CAGAGG-AACACGCTTCGTTTGAAGACG----CGCAAATGGC-----G 450
| .||||| ||.|.| ||||| ||.|.|||.| |
BPUM_2217___y 423 AGAAGAGGCAAAAAG----------AGACGCAGCCGAAGATGTCATCCAG 462
BSNT_03714___ 451 C-----GAGAACGT--TTC---CTTTCGCTAGTGCTGAAACAAGAAGAAC 490
| |.|||||| ||| |.|| ||.|| |.||.|||.|.|
BPUM_2217___y 463 CTTAAAGTGAACGTACTTCAAGCATT------TGATG-ATCAGGAAAAGC 505
BSNT_03714___ 491 AGAGAAAAACTGAAGCGGCGGTTTTTCAAAACGGAAAACCGTTTTTTGCA 540
||.|..||...|||..|||.|||||||||||.||.|.||||.||||..|.
BPUM_2217___y 506 AGCGTGAACGAGAACGGGCCGTTTTTCAAAATGGCAGACCGATTTTCACC 555
BSNT_03714___ 541 TATTTATTTATTGCGCTTCAGATCCTGATGTTTTTCTTGCTCGAAATAAA 590
||..|..|.||.||..||||..|..||||||||.|.||.||.|||.||..
BPUM_2217___y 556 TACCTGCTCATCGCTGTTCAAGTGGTGATGTTTCTTTTACTTGAACTATT 605
BSNT_03714___ 591 CGGGGGCAGCACAAATACGGAGACGCTGGTCGCTTTTGGAGCAAAAGAAA 640
.||.||.||.||.|||||||..||..|....||.|||||.||.|||.|.|
BPUM_2217___y 606 TGGCGGAAGTACCAATACGGCAACTTTAACAGCGTTTGGTGCTAAAAATA 655
BSNT_03714___ 641 ACAGCCTAATTGCACAAGGAGAATGGTGGCGGCTTCTGACACCGATCGTG 690
|..|.||.||...|.|.||||||||||||||.||..|||||||.|| ||.
BPUM_2217___y 656 ATGGGCTGATCTTAGAGGGAGAATGGTGGCGCCTGATGACACCAAT-GTT 704
BSNT_03714___ 691 CTT-CACATCGGCATAGCGCATTTAGCT-TTTAATACGCTGGCTTTATGG 738
.|| |||||.|||.|..||||.||| || ||||||||..|.|||.|.|||
BPUM_2217___y 705 TTTGCACATTGGCTTGACGCACTTA-CTCTTTAATACATTTGCTCTTTGG 753
BSNT_03714___ 739 TCGGTTGGTACAGCGGTTGAGCGGATGTATGGATCGGGGAGATTTTTGCT 788
||.||.||..|.||.||.|||.|.||.|||||.||..||.||||||||||
BPUM_2217___y 754 TCTGTAGGAGCGGCTGTGGAGAGAATTTATGGCTCATGGCGATTTTTGCT 803
BSNT_03714___ 789 GATTTATCTGGCTGCTGGCATTACGGGTTCGATTGCGAGTTTTGTGTTCA 838
.||.|||.|...|.|.||||||...|||||.||||||||||||||.||.|
BPUM_2217___y 804 TATCTATTTCATTTCCGGCATTTTCGGTTCAATTGCGAGTTTTGTCTTTA 853
BSNT_03714___ 839 GCCCGTAT----CCTTCG--GCAGGGGCATCAGGAGCCATATTCGGATGC 882
|| ||.||| ||.||.||||||||.||.||.||.||.|||
BPUM_2217___y 854 ------ATACCGCCATCGCAGCCGGTGCATCAGGTGCGATCTTTGGTTGC 897
BSNT_03714___ 883 TTAGGTGCATTACTGTATGTTGCTTTGTCTAATCGAAAAATGTTTTTAAG 932
|||||||||.||.|.|||.|.||..|.|||||.||.||..|.||.||..|
BPUM_2217___y 898 TTAGGTGCACTATTATATTTGGCAATCTCTAACCGCAAGCTCTTCTTTCG 947
BSNT_03714___ 933 AACCATAGGAACCAATATTATTGTCATTATTATCATCAATCTGGGCTTTG 982
.||.||.||.||.|||||||||||.|||||..||||||||.|.||..|.|
BPUM_2217___y 948 GACGATGGGGACAAATATTATTGTGATTATCCTCATCAATTTAGGAATCG 997
BSNT_03714___ 983 GTTTTGCAGTTTCAAATATTGATAATTCAGGACATATCGGCGGCTTGATT 1032
|.|||.|.||.|||..|||||||||..|.||.||..|.|||||..||.||
BPUM_2217___y 998 GCTTTACCGTATCAGGTATTGATAACGCGGGGCACCTTGGCGGTCTGGTT 1047
BSNT_03714___ 1033 GGCGGCTTTTTCGCTGC---AGCAG--CATTGGGGTTGCCCAAAGCCGG- 1076
|||||.|||||.||||| |||.| | ||..|||.||.|.||
BPUM_2217___y 1048 GGCGGTTTTTTAGCTGCTTTAGCTGTCC------GTCTCCCTAAACAGGT 1091
BSNT_03714___ 1077 --AGCCTTTGGAAAAAGATTGTTGTCAGCGGTTT-----TGCTGATTGCT 1119
|||||.| .||.|.|.||.|||..||...|.| |||||||||.|
BPUM_2217___y 1092 GCAGCCTGT-CAAGATGTTTCTTGCTAGTATTGTACTACTGCTGATTGGT 1140
BSNT_03714___ 1120 TTGGCTGCCGGATTT---TTATATTAC-GGATTGCATTC--GCCTTCACA 1163
||.||| ||.|| ||| ||.||.||||| .|..|||.|
BPUM_2217___y 1141 ---------GGTTTTGGATTGTA-TACAGGGTTTCATTCAGACGATCAAA 1180
BSNT_03714___ 1164 CCAGGAATCAGCGCTGATTCAG-----CAGGCAAGCGAG-CTGTATCAGG 1207
|||||.||||| .||| .|||| |||.|| ||.|.|.|.|
BPUM_2217___y 1181 --AGGAAGCAGCG-----GCAGTAAATGAGGC-AGCAAGTCTATTTGACG 1222
BSNT_03714___ 1208 --AAGGAAAGTAT---GAAG-AAGTAACAGAATTGCTGAACGAAGAAGCA 1251
||| ||.||| |||| ||||||..| .||..|.|||.|.|.|
BPUM_2217___y 1223 ATAAG--AACTATAGCGAAGCAAGTAAGCG----TCTAGAGGAATATGTA 1266
BSNT_03714___ 1252 GCGCAAAAAGATGCCTCTGCCGATCTTTTGAAAATTCTTGCTGTTTCTGA 1301
...|||||||||||.||.|||||...|.|..|.|| |
BPUM_2217___y 1267 CATCAAAAAGATGCATCAGCCGAGGCTCTCCATAT--------------A 1302
BSNT_03714___ 1302 TAT-TAAAATCGG----------CGAATA---TGATCAGGCGGTTTCCCT 1337
||| .|..||||| ||.|.| |||..|.|||.||..|.|
BPUM_2217___y 1303 TATGCACTATCGGAAGCGCAGCTCGGACACCTTGACAAAGCGATTGGCTT 1352
BSNT_03714___ 1338 TTTGGAACGAGCAGTGAAAAAAGAACCTAAAGACCATGCCTCATATTACT 1387
|||..||.|..||.|.||||||||.|| |||..|| ||..||| .|||
BPUM_2217___y 1353 TTTACAAAGGTCACTTAAAAAAGATCC---AGATGAT-CCAAATA-AACT 1397
BSNT_03714___ 1388 -----ATTTAGCCTTATTGTATGCGGAAAAAAATGAGCTTGCACAAGCAG 1432
|||||.|.||.|||||.|..||||||...|||...||..||||||
BPUM_2217___y 1398 GTATCATTTATCGTTGTTGTACGTAGAAAAAGGGGAGACAGCGAAAGCAG 1447
BSNT_03714___ 1433 AAAAGGCCATCAGGTTGGCTGT----GAAACTTAAGCCGAAGGAGCAGCG 1478
|| |.|.| |||| |||||..||
BPUM_2217___y 1448 AA---------------GATCTAATAGAAA---------AAGGATTAG-- 1471
BSNT_03714___ 1479 CTACAAGG------------------------AGCTTCAGCAACAAATTG 1504
||.|.| ||||..|.|||.|.||||
BPUM_2217___y 1472 --ACCAAGATCCAAAAAATGATCAATTGTTAAAGCTGAAACAATATATTG 1519
BSNT_03714___ 1505 AAAACA---ATAAAGAATCATAA 1524
|||||| |.|.|.|.|.|
BPUM_2217___y 1520 AAAACACGCAAACACATTGA--- 1539
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