Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03688 and BPUM_2205
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_03688___comGA.1.24716.seq
# -bsequence dna-align/BPUM_2205___comGA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03688___comGA-BPUM_2205___comGA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03688___comGA-BPUM_2205___comGA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03688___comGA
# 2: BPUM_2205___comGA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1152
# Identity: 734/1152 (63.7%)
# Similarity: 734/1152 (63.7%)
# Gaps: 162/1152 (14.1%)
# Score: 2134.0
#
#
#=======================================
BSNT_03688___ 1 -----TTGGATTCAATA-----GAAAAGGTAAGCAAAAACTTGATTGAAG 40
|.|||||.|||| ||.||| ||| ||.|.||||
BPUM_2205___c 1 TTGTATGGGATTGAATATTTAGGACAAG---AGC-------TGCTAGAAG 40
BSNT_03688___ 41 AAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCCGAGGGAGCGG 90
||||||..|..|..|..||.||||||.|.||||||||.||.|.|||...|
BPUM_2205___c 41 AAGCATGCCGCATGAGAGCATCTGATGTGCACATTGTTCCAAAGGAAAAG 90
BSNT_03688___ 91 GA-----CGCTATCATTCATTTTCGGGTCGA-TCATGCCTTGCTGAAAAA 134
|| ||.|||| |||.||.||.|| ||| |.|||..|..|..|
BPUM_2205___c 91 GAAGCGTCGGTATC-----TTTCCGCGTAGACTCA-GACTTAATTCAGCA 134
BSNT_03688___ 135 AAGGGAC--ATGAAAAAAGAAGAGTGCGTAAGGCTGATTTCACATTTTAA 182
|| |.|| .|||.||||.|||.| |||...|.||.|||.|.||||||||
BPUM_2205___c 135 AA-GAACTATTGATAAAAAAAGCG-GCGAGCGACTCATTGCTCATTTTAA 182
BSNT_03688___ 183 ATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAG----CCGCAAAAC 228
||||.|.||..|.||||||||.||.|||| |||| ||.|||||.
BPUM_2205___c 183 ATTTGTATCTTCTATGGATATTGGGGAAA----AAAGGAGACCTCAAAAT 228
BSNT_03688___ 229 GGTTCGCTTACGTTAAAGCTGA-AAG-----AGGGAAATGTTCATTTAAG 272
||.||.||..|..|.|.|||.| ||| ||| ||||.||| .|
BPUM_2205___c 229 GGGTCACTAGCCGTGATGCTAAGAAGCGGTCAGG----TGTTTATT--CG 272
BSNT_03688___ 273 AATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGTGA 322
||||||.||..|.||.||..|.|||||.||.||..|.|||||.|||.|..
BPUM_2205___c 273 AATGTCTACCTTACCAACTGTAAATGATGAGAGTTTAGTGATTAGAATAT 322
BSNT_03688___ 323 TGCCCCAATACAATATCCCTTCGATTGATAAAT--------TGTCGCTAT 364
||||.||..|..||.|.|| || |||| ||||.||||
BPUM_2205___c 323 TGCCACAGGATCATGTTCC-------GA-AAATAAAGCATCTGTCACTAT 364
BSNT_03688___ 365 TTCCGAAGACAGGAG------CCACATTACTCTCGTTTTTAAAACATTCC 408
||||||| || |||.||||.|.||||||||.||.|||||.
BPUM_2205___c 365 TTCCGAA------AGCCTCCACCAGATTATTATCGTTTTTGAATCATTCG 408
BSNT_03688___ 409 CATGGCATGCTCATT---TTTACCGGGCCAACTGGTTCAGGGAAGACTAC 455
||||| |||.||| ||||||||.|||||...|||||||||.||.||
BPUM_2205___c 409 CATGG---GCTGATTTTATTTACCGGTCCAACCAATTCAGGGAAAACAAC 455
BSNT_03688___ 456 CACACTATACTCTCTCGTTCAATATGCAAAAAAACACTTTAATCGAAATA 505
.||.||.||.||..|..|.||.|.|||||||||..|.||.||||||||||
BPUM_2205___c 456 AACCCTCTATTCATTGATCCAGTTTGCAAAAAAGAATTTCAATCGAAATA 505
BSNT_03688___ 506 TTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAG 555
||.|.|||.|.||.||.||.||.|||||.||..|.|||||.||..|.|||
BPUM_2205___c 506 TTATTACACTTGAAGATCCAGTAGAAACGAGAAATGAAGAAGTGTTACAG 555
BSNT_03688___ 556 GTTCAGGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGC 605
|||||.||.||||||||||||||..|.||.|||.|||||||..|....||
BPUM_2205___c 556 GTTCAAGTAAATGAAAAAGCCGGCATCACATATGCCGCAGGATTACGTGC 605
BSNT_03688___ 606 AATTTTGCGCCATGACCCCGATATGATTATTTTAGGTGAGATCAGAGACG 655
.|||||..|.|||||.||.|||||||||.|..||||.||.||.|||||.|
BPUM_2205___c 606 TATTTTAAGGCATGATCCAGATATGATTGTGCTAGGAGAAATAAGAGATG 655
BSNT_03688___ 656 CGGAAACAGC-TGAAATTGCGG---TGCGGGCAGCGATGACGGGACATCT 701
|.|||||.|| .||| ||| |..|.||||||.||||.||.|||.|
BPUM_2205___c 656 CTGAAACGGCACGAA----CGGCAATTAGAGCAGCGCTGACAGGCCATTT 701
BSNT_03688___ 702 GGTACTAACGAGCCTTCATACGAGAGACGCAAAGGGCGCAATTTACAGAC 751
.||..|.|..|..||.|||.|||.|.|.|||||.||.||..||||..|..
BPUM_2205___c 702 AGTGATGAGTACACTCCATGCGAAAAATGCAAAAGGAGCCCTTTATCGTA 751
BSNT_03688___ 752 TGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGCA 801
||||||||||.|||.|||..||||.||||.|||||||.||..|..|.||.
BPUM_2205___c 752 TGCTTGAATTTGGTGTCACAATGATTGAACTTGAACAAACAATGGTGGCG 801
BSNT_03688___ 802 ATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTG--AAAAC 849
||.||.||.|||||.||..|||||.|..|.||.||.|||||.| .||||
BPUM_2205___c 802 ATTGCTGCGCAGCGATTAATTGATCTCACCTGTCCTTTTTGCGGAGAAAC 851
BSNT_03688___ 850 GGATGTTCATCAG-TGTATTG---------TCG-CCAGTC--ACGAAATA 886
||| |||| |.||.|| ||| ||.||| |||||
BPUM_2205___c 852 --ATG----TCAGCTTTACTGTAAATTAAATCGACCGGTCAGACGAA--- 892
BSNT_03688___ 887 CCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAA 936
|.|..||.|.|||.||.||.|.|||.|||.|.|||....|.
BPUM_2205___c 893 ---------CAAATGTATTTGAACTGCTGTTCGGAAAAGAGCTTGGTGAG 933
BSNT_03688___ 937 TGTATCCAGGAGGCAAAAGGA-AATCATGCAAATTAC----CAATATCAA 981
||||||.|||||||.|||||| ||| |||| |.|| | ||||.||
BPUM_2205___c 934 TGTATCAAGGAGGCGAAAGGAGAAT-ATGC---TCACTCGTC-ATATGAA 978
BSNT_03688___ 982 ACGCTTCGTCAA--ATTA--TCAGGAAAGGAATTGCGCTCGGCTATTTAA 1027
||.|| .||| |||| || |.||||||.|.||.||.|||||||||.
BPUM_2205___c 979 ACACT---GCAAAGATTAATTC-GTAAAGGAGTGGCACTTGGCTATTTAT 1024
BSNT_03688___ 1028 CGACAAACAACTATGACCGGTGGGTTTATCATGAAAAAG-ATTAG----- 1071
|||.|||||.||||.|.||.||||||| |||||.||| | ||
BPUM_2205___c 1025 CGAAAAACACCTATCATCGCTGGGTTT---ATGAAGAAGCA--AGCCTCT 1069
BSNT_03688___ 1071 -- 1071
BPUM_2205___c 1070 AA 1071
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