Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03651 and BPUM_2178
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:11
# Commandline: needle
# -asequence dna-align/BSNT_03651___yqhT.1.24716.seq
# -bsequence dna-align/BPUM_2178___yqhT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03651___yqhT-BPUM_2178___yqhT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03651___yqhT-BPUM_2178___yqhT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03651___yqhT
# 2: BPUM_2178___yqhT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1125
# Identity: 777/1125 (69.1%)
# Similarity: 777/1125 (69.1%)
# Gaps: 126/1125 (11.2%)
# Score: 2535.0
#
#
#=======================================
BSNT_03651___ 1 ATGAAGCTAGAGAAATTAAGAAACCTGTTTGGACAGCTGGGAATTGACGG 50
|||||.||.||.||.|||||||..||.|| |.||| |||.| |.
BPUM_2178___y 1 ATGAAACTTGAAAAGTTAAGAACACTATT-----ATCTG---ATTTA-GA 41
BSNT_03651___ 51 CAT-GCTGG--------TTACAAGCAGCACGAATGTACGCTATATGACAG 91
||| |.||| ||||.||.|||...|||.|||..||.|||||..
BPUM_2178___y 42 CATCGATGGTCTAGTCATTACGAGTAGCTTTAATTTACAGTACATGACCA 91
BSNT_03651___ 92 GGTTTACAGGTTCGGCGGGTTTGGCTGTTATATCGGGTGACAAA------ 135
|.|||||.|||||.||.|||.|.||.||| ||..||||
BPUM_2178___y 92 GCTTTACTGGTTCAGCCGGTCTCGCCGTT-------GTTTCAAAGGACCG 134
BSNT_03651___ 136 -GCAGCGTTTATTACGGATTTTCGTTATACTGAGCAGGCGAAGGTTCAGG 184
|||||.|||||.|||||.||.||||||||.|||||.|||||||..||.|
BPUM_2178___y 135 GGCAGCTTTTATCACGGACTTCCGTTATACAGAGCAAGCGAAGGACCAAG 184
BSNT_03651___ 185 TAAAGGGTTTTGAGATCATTGAACATGGCGGCAGCTTGAT-TCAG--ACC 231
||||.||.||.||.||.|||||||||...||.|.| || .||| |||
BPUM_2178___y 185 TAAAAGGCTTCGACATTATTGAACATAAAGGAAAC---ATCGCAGAAACC 231
BSNT_03651___ 232 ACTGCCGACACTG---TTGAATCGTTTGGCATCAAGCGTCTCGGTTTTGA 278
.|.||..|.||.| ..||| |||||.|||||.|||||.||.|||||
BPUM_2178___y 232 GCGGCTCAAACAGCAAAGGAA---TTTGGGATCAAACGTCTTGGGTTTGA 278
BSNT_03651___ 279 ACAGAACAGCATGACATATGGCACTTACGCTTCATACAGCGCCGTTATCA 328
|||.|||...|||||||.||.|||.||| ||| ||
BPUM_2178___y 279 ACAAAACCATATGACATTTGCCACGTAC--------CAG---------CA 311
BSNT_03651___ 329 GTGATGC------------CGAATTAGTGCCTGT---GG---CTGAATCC 360
|| |||| |||..|||.||.||| || |.|||||.
BPUM_2178___y 312 GT-ATGCAGGTAAAGCAGGCGATATAGAGCTTGTTCCGGTCTCAGAATCA 360
BSNT_03651___ 361 GTGGAAAAGTTGCGCTTGATTAAGTCTAGTGAAGAGATTAAGATATTAGA 410
||.|||||||||||||||||||||||||||||||||||||||||||||||
BPUM_2178___y 361 GTTGAAAAGTTGCGCTTGATTAAGTCTAGTGAAGAGATTAAGATATTAGA 410
BSNT_03651___ 411 GGAAGCTGCGAAGATTGCAGATGATGCCTTCAGA-CATATCTTGACGTTT 459
||||||||||||||||||||||.|.||||| .|| |||||..|.||.|..
BPUM_2178___y 411 GGAAGCTGCGAAGATTGCAGATCACGCCTT-TGATCATATTCTCACTTAC 459
BSNT_03651___ 460 ATGAAACCCGGCATTTCTGAAATCGCTGT--TGCCAATGAGCTGGAGTTT 507
||.||.||.|||.|..|.|||||.||||| || ||.|||||.||.|||
BPUM_2178___y 460 ATCAAGCCGGGCCTGACGGAAATTGCTGTCATG--AACGAGCTTGAATTT 507
BSNT_03651___ 508 TATATGAGAAGCCAGGGAGCAGACAGCTCTTCTTTTGATATGATTGTCGC 557
|..|||||||...|.||.||.||..|.|||||.||.||||||||||||||
BPUM_2178___y 508 TTCATGAGAAAAGAAGGCGCTGAAGGATCTTCATTCGATATGATTGTCGC 557
BSNT_03651___ 558 CTCAGGCCTTCGTTCAAGCCTTCCGCACGGTGTGGCCAGTGACAAACTGA 607
||||||..|||||||||||||.||||||||....||.|||||.||..|||
BPUM_2178___y 558 CTCAGGTGTTCGTTCAAGCCTGCCGCACGGAAGAGCGAGTGAAAAGGTGA 607
BSNT_03651___ 608 TTGAAAGCGGAGACCTTGTTACGCTTGATTTTGGCGCTTATTATAAAGGA 657
|||||...||.||..|.||.||.||.|||||.||.|||||.||||||||.
BPUM_2178___y 608 TTGAATCTGGTGATTTAGTCACACTCGATTTCGGTGCTTACTATAAAGGG 657
BSNT_03651___ 658 TATTGTTCTGATATTACCCGGACGGTCGCTGTAGGTCA-GCCCAGTGATC 706
||||||||||||||.||..|.|||.|.||||| .|.|| .||.||.|||.
BPUM_2178___y 658 TATTGTTCTGATATGACAAGAACGATTGCTGT-TGACACACCGAGCGATA 706
BSNT_03651___ 707 AATTGAAGGAGATCTATCAGGTTGTATTTGATGCTCAG---GCGCTTGGC 753
|..|.|||||.||.|||||..|.|||||.||.| ||| .||| |||.
BPUM_2178___y 707 AGCTAAAGGAAATTTATCATATCGTATTAGAAG--CAGAAAACGC-TGGT 753
BSNT_03651___ 754 GTCGCACAT---ATTAAGCCGGGAATGACAGGAAAAGAGGCTGA-CGCCC 799
||.| || ||.|||||.||..|.|||||||||||.||||| || |.
BPUM_2178___y 754 GTGG---ATAGAATCAAGCCAGGCTTAACAGGAAAAGAAGCTGATCG-CA 799
BSNT_03651___ 800 TCACAAGGGATCAT-ATTGCTGCAAAA----GGCTACGGTGACTATTTCG 844
|||||.|.|| ||| |||| |||| |||||.|||.|.||.||||
BPUM_2178___y 800 TCACACGTGA-CATCATTG----AAAAGTATGGCTATGGTCAATACTTCG 844
BSNT_03651___ 845 GCCATTCAACCGGGCACGGGCTCGGCATGGAAGTTCATGAATCGCCGGGA 894
|.||||||||.||.||||||||.||.||||||||.||||||.||||.||.
BPUM_2178___y 845 GGCATTCAACTGGCCACGGGCTAGGGATGGAAGTACATGAAGCGCCAGGC 894
BSNT_03651___ 895 TTATCCGTCA-GATCTTCAGCTATC--CTT-GAACCGGGTATGGTGGTCA 940
.|.||| ||| || ||||...|| ||| |||..|||.|||||.||.|
BPUM_2178___y 895 CTTTCC-TCACGA---TCAGAGGTCGTCTTAGAAGAGGGAATGGTCGTGA 940
BSNT_03651___ 941 CAGTGGAGCCGGGCATTTACATACCAGAAACAGGCGGTGTCCGCATTGAA 990
||||.||||||||.||||||.|.|||||....|||||.||..|.|||||.
BPUM_2178___y 941 CAGTTGAGCCGGGAATTTACTTGCCAGATGTCGGCGGCGTGAGAATTGAG 990
BSNT_03651___ 991 GATGACATCGTGATTACAGAAAACGGC---AACCGGACAATCACCCATTC 1037
|||||.||.||..|.||||...||||| ||.|| |.|.|||||.||
BPUM_2178___y 991 GATGATATAGTCCTGACAGCTGACGGCAATAAACG---ATTGACCCACTC 1037
BSNT_03651___ 1038 CCCAAAAGAACTTATTATTTTGTGA 1062
.||.|||||||||||.||.||.|||
BPUM_2178___y 1038 ACCGAAAGAACTTATCATATTATGA 1062
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