Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03374 and BPUM_2000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_03374___aroH.1.24716.seq
# -bsequence dna-align/BPUM_2000___aroH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03374___aroH-BPUM_2000___aroH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03374___aroH-BPUM_2000___aroH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03374___aroH
# 2: BPUM_2000___aroH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 414
# Identity: 271/414 (65.5%)
# Similarity: 271/414 (65.5%)
# Gaps: 60/414 (14.5%)
# Score: 831.5
#
#
#=======================================
BSNT_03374___ 1 ATGATGATTCGCGGAATTCGCGGAGCAACTACAGT---TGAACGGGATAC 47
||||||.|||||||.||.||.||.||.||.||.|| .||| |||||
BPUM_2000___a 1 ATGATGTTTCGCGGGATACGTGGGGCTACAACTGTGACAGAA---GATAC 47
BSNT_03374___ 48 TGAAGAAGAAATTTTACAAAAAACTAAACAGCTGTTAGA---GA------ 88
.|||..||||.|.|||.|.|||||.|||||||||.|||| ||
BPUM_2000___a 48 AGAAACAGAAGTGTTAAACAAAACGAAACAGCTGCTAGAAGCGATTATTT 97
BSNT_03374___ 89 ----AAATCATAGAAGAAAATCATACAAAACCGGAAGATGTTGTTCAAAT 134
|||| ||||.|.|| ||.|||..|||.||.||.||
BPUM_2000___a 98 CAAGAAAT----GAAGTAGAT---------CCAGAACGTGTCGTGCAGAT 134
BSNT_03374___ 135 GCTTCTGTCGGCTACACCTGATTTGCACGCTGTTTTCCCGGCAAAAGCTG 184
..|..|.||.|||||||..|||.|.|||.|.|||||.|||||||||||..
BPUM_2000___a 135 TTTAATTTCAGCTACACAAGATATTCACTCCGTTTTTCCGGCAAAAGCCC 184
BSNT_03374___ 185 TTCGCGAGCTTTCAGGATGGCAGTATGTACCGGTAACATGTATGCAGGAA 234
||||..||.||..|||.|||..||||||.||.||.||.|||||||||||.
BPUM_2000___a 185 TTCGTCAGTTTGAAGGGTGGACGTATGTGCCTGTTACTTGTATGCAGGAG 234
BSNT_03374___ 235 ATGGACGTAACA-GGCGGTCTGAAAAAGTGCATAAGAGTCATGATGACCG 283
.|||||.| .|| ||||||||.||..|.||.||..|.||..|.|||||.|
BPUM_2000___a 235 CTGGACAT-TCATGGCGGTCTAAAGCATTGTATTCGTGTGTTAATGACGG 283
BSNT_03374___ 284 TCCAGACAGATGTCCC---TCAGGATCAGAT---CAGACATGTATATTTA 327
||||.||||| |.| .||||| |||| ||| |||||.||.||.
BPUM_2000___a 284 TCCAAACAGA---CACAAAGCAGGA--AGATGTGCAG-CATGTGTACTTG 327
BSNT_03374___ 328 GAAAAAGCCGTCGTATTGA------GGCCCGATTTATCA-TTGACAAAAA 370
|||.||||.| ||| |.||.|||||| || ||||||||||
BPUM_2000___a 328 GAAGAAGCTG------TGACGCTTCGCCCTGATTTA-CAGTTGACAAAAA 370
BSNT_03374___ 371 ATACTGAATTGTAA 384
|.|..|||||.|||
BPUM_2000___a 371 ACAAGGAATTATAA 384
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