Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03121 and BPUM_1850
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_03121___yocC.1.24716.seq
# -bsequence dna-align/BPUM_1850___yocC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03121___yocC-BPUM_1850___yocC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03121___yocC-BPUM_1850___yocC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03121___yocC
# 2: BPUM_1850___yocC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 609
# Identity: 355/609 (58.3%)
# Similarity: 355/609 (58.3%)
# Gaps: 135/609 (22.2%)
# Score: 1080.5
#
#
#=======================================
BSNT_03121___ 0 -------------------------------------------------- 0
BPUM_1850___y 1 TTGAAAGATCCATCCACTTCCTTTAAAATTGGAATTTATGTGATTTTTAT 50
BSNT_03121___ 1 ----------------------------TTGTTTACTATTAAAGAAAA-- 20
||| |.|.|.|||.||.|||
BPUM_1850___y 51 CATTTCTGATAGGAAAGGAGTAATGGACTTG-TCAATCTTACAGGAAACA 99
BSNT_03121___ 21 ------------AAATCGTCAAGAGCTTGAAGAAGAACTAAATGATTTAG 58
||.|||| .||||| ||||..||.|..|.||..
BPUM_1850___y 100 GCCAAAGATGTGAAGTCGT-TAGAGC------AAGATTTACAGCAATTGC 142
BSNT_03121___ 59 AATTTCAAATTTATCGCATGCAGGAGAATATGAAGGATTTGTCTAAAGAT 108
|.||.|||||.|||||.|||||.||.||.|||||.|||.|.||.|||.|.
BPUM_1850___y 143 AGTTCCAAATGTATCGAATGCAAGAAAACATGAAAGATATTTCGAAAAAA 192
BSNT_03121___ 109 GCCAAAGTGCTTGGTATTGATCAATCGAAACATGATGAGTGGATGATTGT 158
||.|||.|..||||.||.||||||.|||||.|.|||||||||.||||.||
BPUM_1850___y 193 GCAAAAATCATTGGCATCGATCAAGCGAAAGAAGATGAGTGGCTGATCGT 242
BSNT_03121___ 159 TTCCTCGATTGATGATGGCCAAACATGCAAAATTATGCTAACTGATTGTA 208
.||..|.|||||..|||...|.|||||.|||||||||||.|..||||||.
BPUM_1850___y 243 CTCTGCCATTGAAAATGCAGATACATGTAAAATTATGCTCAGCGATTGTG 292
BSNT_03121___ 209 AAACGGCTTACCGAGGAAAAGGCTG-TTTTTCACTT-GTAGCG-----TC 251
|||..||||..||.|||.|| .||| |||||| ||| .|.||| ||
BPUM_1850___y 293 AAAAAGCTTTTCGCGGACAA-TCTGATTTTTC-CTTAATTGCGGAATATC 340
BSNT_03121___ 252 TT--ACAAGGACGATGCCATTCATATAGGGGATATAAAAGGCCCTCCGAA 299
.| |.||||| |.| ||||||||.|..|||||.||||||||.||..|
BPUM_1850___y 341 CTGAAGAAGGA--AAG--ATTCATATTGCCGATATTAAAGGCCCGCCAGA 386
BSNT_03121___ 300 TCACGGGTTTGGTTCCATTTGCATGAAATATTTAAAAGATATAGCAAGAG 349
|.|.||||..||.|||||.||||||||..||||||||||.||.||.||||
BPUM_1850___y 387 TAATGGGTACGGCTCCATCTGCATGAAGCATTTAAAAGAAATCGCTAGAG 436
BSNT_03121___ 350 ACCACAATATACCGAAAG---TCACCGGAGACATCGCCAAACGGGATTGG 396
|.||.||.||.|| || |.||.||.|||.|||.||||.|.||.|||
BPUM_1850___y 437 AGCAGAACATCCC---AGTGATTACTGGTGACCTCGTCAAAAGAGACTGG 483
BSNT_03121___ 397 AATCATGTAGACCGGCTGATTCACTTTTATGAAAAACATCAATTCAAAGT 446
.||||.||.|||||..|||||||.|||||||||||.|||||||| |
BPUM_1850___y 484 GATCACGTGGACCGCTTGATTCATTTTTATGAAAAGCATCAATT-----T 528
BSNT_03121___ 447 -ATGTATCGATCA--TG---ATACCCAATCCGGCAG-CATTAAGTGGGTT 489
||||...||||| || |.|.|.||.| |.|| .|||.|.|||||.
BPUM_1850___y 529 GATGTCCAGATCAATTGGAAAGAACAAAGC--GGAGAAATTTATTGGGTG 576
BSNT_03121___ 490 GATTTGTAA 498
||....|||
BPUM_1850___y 577 GACAGCTAA 585
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