Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03114 and BPUM_1843

See Amino acid alignment / Visit BSNT_03114 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_03114___yozA.1.24716.seq
#    -bsequence dna-align/BPUM_1843___yozA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03114___yozA-BPUM_1843___yozA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03114___yozA-BPUM_1843___yozA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03114___yozA
# 2: BPUM_1843___yozA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 334
# Identity:     231/334 (69.2%)
# Similarity:   231/334 (69.2%)
# Gaps:          14/334 ( 4.2%)
# Score: 754.0
# 
#
#=======================================

BSNT_03114___      1 ATG--------ACTGAATTTAGAGAAACGGAACA--ATCGGCTGCTGATC     40
                     |||        |||||||..|.|..||  |||||  |.|||.||  ||.|
BPUM_1843___y      1 ATGAAGGAAGAACTGAATACAAATCAA--GAACAGGAACGGATG--GAGC     46

BSNT_03114___     41 TGGACGAGGAGACGCTGTTTCTAGTCGCGCAAACATTCAAAGCGCTTTCT     90
                     ||||.||.||.|...|.|||||.|||.|.|||||.||.|||||..|.|||
BPUM_1843___y     47 TGGATGAAGAAAGTTTATTTCTTGTCTCCCAAACCTTTAAAGCTTTATCT     96

BSNT_03114___     91 GATCCAACCCGAATCAGGATTCTCCATTTATTGTCCCAGGGAGAACATGC    140
                     |||||.||.||.||..|.|||||.||..|..||||.||.||.|||||..|
BPUM_1843___y     97 GATCCGACACGTATTCGAATTCTGCACCTGCTGTCTCAAGGTGAACACTC    146

BSNT_03114___    141 TGTAAACGGAATTGCAGAAAAGCTGAATTTACTGCAATCCACCGTGTCCC    190
                     .||.||.|..||.|||||||..||||||.|..|||||||.|||||.||.|
BPUM_1843___y    147 GGTTAATGATATAGCAGAAACACTGAATCTCATGCAATCAACCGTTTCTC    196

BSNT_03114___    191 ACCAGCTTAGATTTTTGAAAAATCTTCGGCTTGTCAAATCGCGCAGAGAA    240
                     |.|||||..|.|||||.|||||||||||.||.||.|||||..|..|||.|
BPUM_1843___y    197 ATCAGCTGCGCTTTTTAAAAAATCTTCGTCTCGTGAAATCTAGACGAGCA    246

BSNT_03114___    241 GGAACATCGATTTATTACTCTCCGGAGGATGAACATGTTTTAGATGTTCT    290
                     ||.||.||.||||.||||...||.||.|||.|.|||||..|.||.||.||
BPUM_1843___y    247 GGGACTTCCATTTTTTACAGCCCTGAAGATCAGCATGTGATGGAAGTGCT    296

BSNT_03114___    291 TCAGCAAATGATCCATCATACACAGCATGATTGA    324
                     |.|.||.|||||.||.|||.|||||||.||||||
BPUM_1843___y    297 TGAACAGATGATTCACCATGCACAGCACGATTGA    330


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.