Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04410 and BPUM_1751
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_04410___amyC.1.24716.seq
# -bsequence dna-align/BPUM_1751___amyC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04410___amyC-BPUM_1751___amyC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04410___amyC-BPUM_1751___amyC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04410___amyC
# 2: BPUM_1751___amyC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 881
# Identity: 576/881 (65.4%)
# Similarity: 576/881 (65.4%)
# Gaps: 100/881 (11.4%)
# Score: 1697.0
#
#
#=======================================
BSNT_04410___ 1 ATG----AGAGCCGCC------CGTACAAAAAGCATGCGGATCATTACGC 40
||| |.| || ||||..||.|| ||| .|||.|
BPUM_1751___a 1 ATGGAAAATA----CCTTTAAACGTAAGAAGAG-ATG-------GTACAC 38
BSNT_04410___ 41 --TTCTTGCAGCCATTGTG--GCCTGTGC-GCATTTTATTCCTTTTTATA 85
|.||| |||.||.|| |.|.|||| .|||.|.|||||.|||||||
BPUM_1751___a 39 CGTCCTT---GCCCTTTTGGTGACAGTGCTTCATCTCATTCCATTTTATA 85
BSNT_04410___ 86 TCCTGCTGACCACTTCATTGAAAGCAAAAGGAGACTACAGTTCGAAATGG 135
||.|||||||.||.|||||.||.|.||.||||||.|..|||||.||.|||
BPUM_1751___a 86 TCTTGCTGACGACATCATTCAAGGGAATAGGAGATTTTAGTTCAAAGTGG 135
BSNT_04410___ 136 ATATTTCCAGCCGACATCTCCTTTCAT-----AATTTTTCAGA-GGCGTG 179
.|.|||||| |.|.|.| ||||| ||..||||..| |||.||
BPUM_1751___a 136 CTGTTTCCA----AAAGCGC--TTCATCTTGAAAACTTTCGCACGGCATG 179
BSNT_04410___ 180 G---GAGCGCGCTTCGCTAGGAAACTCTTTTATAAACACCATGATCATCA 226
| ||| ||...|||.||..|.||.|||.|.||.||..|||||||.|
BPUM_1751___a 180 GACAGAG---GCACAGCTTGGTCAGTCCTTTTTGAATACTGTGATCATTA 226
BSNT_04410___ 227 CAGGTTTT----TCTGCCTTGTTAT---TAAT-TATATTCGGCTCACTTG 268
|| || ||||| || ||| |.|| |.|.|| ||.||.||||
BPUM_1751___a 227 CA----TTCAGCTCTGC--TG-TATGCCTCATCTTTCTT-GGTTCCCTTG 268
BSNT_04410___ 269 CCGCCTACCCGCTTGCCCGGCGGGAA--ACGAAACTGAATAAAGCCGTTT 316
|.|||||.|||||.||..| |.||| ||.||.||.||||||||.||.|
BPUM_1751___a 269 CAGCCTATCCGCTCGCAAG--GAGAAGCACAAAGCTAAATAAAGCAGTGT 316
BSNT_04410___ 317 TTGCCTTGCTGATTTCCATTATGATCATCCCTCCGTTAACGTCCATGGTT 366
.||..||..|.|||.|.||||||.||||.||.||..|.||..||.|.||.
BPUM_1751___a 317 ATGTTTTATTCATTGCTATTATGGTCATTCCACCACTCACAGCCCTTGTC 366
BSNT_04410___ 367 CCTTTGTACCGAATGGTCGTGGACGCCGGAATGGTCAATACACACGCAAT 416
||..|.||...|||||||||..|...|||.|||.|.||.||..|...|||
BPUM_1751___a 367 CCGCTCTATAAAATGGTCGTTCAAATCGGGATGATGAACACCTATCAAAT 416
BSNT_04410___ 417 CGCCATTTTCATCAATACAGCGGCTTACATGCCTTTAACCGTATTCTTAT 466
|||.|||||.|..|||...||.||||...||||..||||..|.|||||||
BPUM_1751___a 417 CGCTATTTTAAATAATGTTGCTGCTTTTTTGCCGCTAACGATTTTCTTAT 466
BSNT_04410___ 467 ATTCAGGCTTTATCCGATCGACCATTCCAAAAGAGCTTGAAGAAGCTGCA 516
|..|||||||||||||.||||||||||||||.||||||||||||||.||.
BPUM_1751___a 467 ACGCAGGCTTTATCCGGTCGACCATTCCAAAGGAGCTTGAAGAAGCAGCC 516
BSNT_04410___ 517 AGAATTGACGGCGCAGGCATGCTGAAAATCTTTTTTACGATTGTGTTTCC 566
.|.|||||.||.||.||.|..||.|...|.|||||.||.||.||.||.||
BPUM_1751___a 517 CGTATTGATGGAGCGGGGACACTTAGGGTTTTTTTCACCATCGTTTTCCC 566
BSNT_04410___ 567 TCTGCTGAAGCCGATCACTGCGACCATCTGT----ATTATTTCTTGTGTC 612
.||.|||||.||.||.||.| |.||.|| ||.|||.|.|||||.
BPUM_1751___a 567 ACTTCTGAAACCTATTACCG----CTTCGGTTTTAATCATTGCCTGTGTG 612
BSNT_04410___ 613 TTTATTTGGAACGACTATCAATTTGCCATTTTCTTTTTACAAGATCAAAA 662
|.|||||||||||||||||||||||||||.|||||||||||||||.|..|
BPUM_1751___a 613 TATATTTGGAACGACTATCAATTTGCCATCTTCTTTTTACAAGATAAGGA 662
BSNT_04410___ 663 GGTTCAGACATTAACAGTAGCC--ATGGCAGGTTTTTTCGGAGAAAA--C 708
|.|.||.|||.|.|||||.||| ||..|| ||||||.||..|||| .
BPUM_1751___a 663 GATGCATACACTCACAGTCGCCTTATCCCA--TTTTTTTGGTCAAAATCA 710
BSNT_04410___ 709 GCAAACAACCTTCATTTA------GTTGCCGCAGCGGCACTTATGGCAAT 752
||| |||.||| ||||..||.||.||.||.||.||.||
BPUM_1751___a 711 GCA--------TCAGTTACAGCTCGTTGGTGCCGCTGCGCTCATTGCGAT 752
BSNT_04410___ 753 GCTGCCGATGGTTGTTCTGTTTTTGGCGCTGCAAAAATACTTTATTGCCG 802
||||||.|||||..|..|||||||...|.||||||||||.|||||.||.|
BPUM_1751___a 753 GCTGCCAATGGTAATGATGTTTTTACTGTTGCAAAAATATTTTATCGCAG 802
BSNT_04410___ 803 GCCTGTCTTCCGGAGCGGT-AAAGGGTTAA- 831
|.||.||....||..|.|| ||||||| |
BPUM_1751___a 803 GGCTTTCACAAGGCTCTGTCAAAGGGT--AG 831
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