Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03004 and BPUM_1747
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:32
# Commandline: needle
# -asequence dna-align/BSNT_03004___ynfF.1.24716.seq
# -bsequence dna-align/BPUM_1747___ynfF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03004___ynfF-BPUM_1747___ynfF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03004___ynfF-BPUM_1747___ynfF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03004___ynfF
# 2: BPUM_1747___ynfF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1281
# Identity: 1002/1281 (78.2%)
# Similarity: 1002/1281 (78.2%)
# Gaps: 27/1281 ( 2.1%)
# Score: 3874.5
#
#
#=======================================
BSNT_03004___ 1 ATGATTCCACGCATAAAAAAAACAATTTGTGTAC--TATTAGTATGTTTC 48
||| |||| ..||.||||||.||||| ||.|| ||||.||.||.|||
BPUM_1747___y 1 ATG--TCCA-TAATCAAAAAACCAATT--TGCACTTTATTGGTCTGCTTC 45
BSNT_03004___ 49 ACTATGCTGTCAGTCATGT---TAGGGCCAGGCGCTACTGAAGTTTTGGC 95
|||||||||||.||||||| ||||.||.||||..|||||.||.|..||
BPUM_1747___y 46 ACTATGCTGTCTGTCATGTTCATAGGCCCCGGCGTAACTGAGGTGTCAGC 95
BSNT_03004___ 96 AGCCAGTGATG-TAACAGTTAATGT-ATCTGCAGAGAAACAAGTGATTCG 143
.||.||||||| .||.| ||||||| |.| ||.||.|.||||.||||.||
BPUM_1747___y 96 GGCAAGTGATGCGAATA-TTAATGTCAAC-GCGGAAAGACAAATGATCCG 143
BSNT_03004___ 144 CGGTTTTGGAGGGATGAACCATCCGGCTTGGGCTGGGGATCTTACAGCAG 193
|||.|||||.||.||||||||||||||||||..|||.|||.|.||.|.|.
BPUM_1747___y 144 CGGCTTTGGCGGAATGAACCATCCGGCTTGGATTGGTGATTTGACCGGAC 193
BSNT_03004___ 194 CTCAAAGAGAAACTGCTTTTGGCAATGAACAGAACCAGTTAGGATTTTCA 243
|||||||.|||||.||.|||||.||||..|||||.|||||||||||.||.
BPUM_1747___y 194 CTCAAAGGGAAACCGCATTTGGTAATGGGCAGAATCAGTTAGGATTCTCC 243
BSNT_03004___ 244 ATCTTAAGAATTCATGTAGATGAAAATCGAAATAATTGGTATAAAGAGGT 293
||.|||.|.|||.|||||||.||.||..|||||||||||.|.|.|||.||
BPUM_1747___y 244 ATTTTACGGATTTATGTAGACGAGAACAGAAATAATTGGCACAGAGAAGT 293
BSNT_03004___ 294 GGAGACTGCCAAGAGTGCGGTCAAACATGGGGCAATCGTTTTTGCATCTC 343
.|..||.||.||.||.|||.|..|.||.||.||..|.||..|.||.||.|
BPUM_1747___y 294 CGCCACCGCTAAAAGAGCGATAGAGCACGGCGCTTTGGTGATCGCTTCAC 343
BSNT_03004___ 344 CCTGGAATCCTCCAAGTGATATGGTTGAGACCTTCAATCGGAATGGTGAC 393
|.||||||||||||||..|||||||.|||||.|||||.||.|||||||
BPUM_1747___y 344 CTTGGAATCCTCCAAGCCATATGGTGGAGACTTTCAACCGTAATGGTG-- 391
BSNT_03004___ 394 ACATCAGCTAAGCGGCTGAAATACGATAAGTACGCCGCATACGCGCAGCA 443
|.||.||.||||||||.|.||||.||.|.||||||||||||||.|||||
BPUM_1747___y 392 -CGTCTGCAAAGCGGCTAAGATACAATCAATACGCCGCATACGCTCAGCA 440
BSNT_03004___ 444 TCTTAACGATTTTGTTACCTTCATGAAAAATAATGGTGTGAATCTTTATG 493
|.|.||.||||||||.||.|.|||||||||||||||.||.|||||.||||
BPUM_1747___y 441 TTTGAATGATTTTGTGACATACATGAAAAATAATGGCGTCAATCTATATG 490
BSNT_03004___ 494 CGATTTCGGTCCAAAACGAGCCTGATTACGCTCACGAGTGGACGTGGTGG 543
|.|||||.||.|||||||||||||||||.||.||.||.|||||.||||||
BPUM_1747___y 491 CCATTTCTGTACAAAACGAGCCTGATTATGCACATGAATGGACATGGTGG 540
BSNT_03004___ 544 ACGCCGCAAGAAATACTTCGCTTTATGAGAGAAAACGCCGGCTCGATCAA 593
||.||.||.|||||.||.||.||.|||||||||||.||||||||.||.||
BPUM_1747___y 541 ACACCTCAGGAAATCCTGCGATTCATGAGAGAAAATGCCGGCTCCATTAA 590
BSNT_03004___ 594 TGCCCGCGTCATTGCACCTGAGTCTTTTCAATACTTAAAGAATTTGTCGG 643
.||.|||||.||||||||.||.||.|||||||||.|.||||||.|.||.|
BPUM_1747___y 591 CGCACGCGTGATTGCACCAGAATCCTTTCAATACCTTAAGAATATCTCAG 640
BSNT_03004___ 644 ACCCGATCTTGAACGATCCGCAGGCTCTTGCCAATATGGATATTCTCGGA 693
|.||.|||||.||||||.|||||||.|||...||||||||.|||||||||
BPUM_1747___y 641 ATCCTATCTTAAACGATTCGCAGGCGCTTAGAAATATGGACATTCTCGGA 690
BSNT_03004___ 694 ACTCACCTGTACGGCACCCAGGTCAGCCAATTCCCTTATCCTCTTTTCAA 743
.|.||.||||||||.|||||..|.|||||..|.||.||||||||||||||
BPUM_1747___y 691 GCCCATCTGTACGGAACCCAAATTAGCCAGCTTCCGTATCCTCTTTTCAA 740
BSNT_03004___ 744 ACAAAAAGGAGCGGGGAAGGACCTTTGGATGACGGAAGTATACTATCCAA 793
|||||||||||.|||.||.||.||.||||||||.||.||.|||||.||.|
BPUM_1747___y 741 ACAAAAAGGAGGGGGAAAAGAGCTGTGGATGACAGAGGTCTACTACCCGA 790
BSNT_03004___ 794 ACAGTGATAACAACTCGGCGGATCGATGGCCTGAGGCATTGGATGTTTCA 843
|.||.||||||||.||.||.||.||.||||||||||||||.|..||.|||
BPUM_1747___y 791 ATAGCGATAACAATTCTGCAGACCGCTGGCCTGAGGCATTAGGGGTATCA 840
BSNT_03004___ 844 CAGCATATTCACAATGCGATGGTAGAGGGGGACTTTCAAGCTTATGTATG 893
.|||||||||||.||.|.|||||.||.|||||||||||.||.|||||.||
BPUM_1747___y 841 GAGCATATTCACCATTCAATGGTGGAAGGGGACTTTCAGGCGTATGTGTG 890
BSNT_03004___ 894 GTGGTACATCCGAAGATCATATGGACCTATGAAAGAAGATGGTACGATCA 943
||||||||||||.||||||||.||.|||||||||||||||||.|.|||.|
BPUM_1747___y 891 GTGGTACATCCGCAGATCATACGGTCCTATGAAAGAAGATGGAATGATTA 940
BSNT_03004___ 944 GCAAACGCGGCTACAATATGGCTCATTTCTCAAAGTTTGTGCGTCCCGGC 993
||||.|||||.|||||||||||.||||||||.||||||||||||||.||.
BPUM_1747___y 941 GCAAGCGCGGATACAATATGGCGCATTTCTCCAAGTTTGTGCGTCCAGGA 990
BSNT_03004___ 994 TATGTAAGGATTGATGCAACGAAAAACCCTAATGCGAACGTTTACGTGTC 1043
|..||.||..||||||||||.||||.||||.|..||||.||||.||||||
BPUM_1747___y 991 TTCGTCAGAGTTGATGCAACAAAAAGCCCTGAACCGAATGTTTTCGTGTC 1040
BSNT_03004___ 1044 AGCCTATAAAGGTGACAACAAGGTCGTTATTGTTGCCATCAATAAAAGCA 1093
||||||||||||..||||..|||||||.|||||.||.||.||.||||.||
BPUM_1747___y 1041 AGCCTATAAAGGAAACAATCAGGTCGTCATTGTCGCGATTAACAAAAACA 1090
BSNT_03004___ 1094 ACACAGGAGTCAACCAAAACTTTGTTTTGCAGAATGGATCTGCTTCAAAC 1143
|..||||||||||.|||.||||||||.||||.||||||.|||||||.||.
BPUM_1747___y 1091 ATGCAGGAGTCAATCAACACTTTGTTATGCAAAATGGAACTGCTTCGAAA 1140
BSNT_03004___ 1144 GTATCTAGATGGATCACGAGCAGCAGCAGCAATCTACAACCTGGAACGAA 1193
|..||.||||||.||||.||.||.|.|||.||.||.||.|||||||
BPUM_1747___y 1141 GCGTCAAGATGGGTCACAAGTAGTAACAGTAACCTTCAGCCTGGAA---- 1186
BSNT_03004___ 1194 TCTCACT-----GTATCAGGCAATCATTTTTGGGCCCATCTTCCAGCTCA 1238
||.||| .|||||||.|||||.||||||||.|||||.||.|||||
BPUM_1747___y 1187 -CTGACTTAAACATATCAGGAAATCAATTTTGGGCACATCTCCCTGCTCA 1235
BSNT_03004___ 1239 AAGCGTAACAACATTTGTTGTAAATCGTTAA 1269
|||.||.|||||||||||.||.||.||.|||
BPUM_1747___y 1236 AAGTGTGACAACATTTGTGGTCAAACGCTAA 1266
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