Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02404 and BPUM_1337
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:53
# Commandline: needle
# -asequence dna-align/BSNT_02404___sipT.1.24716.seq
# -bsequence dna-align/BPUM_1337___sipT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02404___sipT-BPUM_1337___sipT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02404___sipT-BPUM_1337___sipT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02404___sipT
# 2: BPUM_1337___sipT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 628
# Identity: 426/628 (67.8%)
# Similarity: 426/628 (67.8%)
# Gaps: 68/628 (10.8%)
# Score: 1341.5
#
#
#=======================================
BSNT_02404___ 1 TTGACCGAGGAAAA-----AAATACGAATA-----------CTGA----- 29
||||.|||.||||| ||| |||||.| ||||
BPUM_1337___s 1 TTGAACGAAGAAAACAAACAAA-ACGAAAATGATATTCAATCTGATGTAA 49
BSNT_02404___ 30 -------GAAAACGGCGAAGAAAAAAACCAATACGTAC-CTG---GAATG 68
.|||||.|.|||||||| ||.| ||| |||||
BPUM_1337___s 50 AACAAGCCAAAACAGAGAAGAAAA----------GTTCACTGTTTGAATG 89
BSNT_02404___ 69 GGGTAAAGCGATTGTCATCGCTGTTCTGCTGGCTC-TCCTGATCCGTCAC 117
|...|||||.|||.|.||.||..||..|||.| || |.||.|||||| ||
BPUM_1337___s 90 GATCAAAGCCATTTTAATTGCACTTGCGCTCG-TCTTGCTCATCCGT-AC 137
BSNT_02404___ 118 -TTTTTGTTTGAACCGTATTTAGTTGAAGGTTCATCTATGTATCCCACAT 166
|||.|.|||||.||||||.|.||.|||||....||.|||.|.||.||..
BPUM_1337___s 138 GTTTATATTTGAGCCGTATGTGGTGGAAGGAGAGTCGATGGAACCGACCC 187
BSNT_02404___ 167 TACATGACGGAGAAAGGCTGTTTGTGAATAAAACAGTCAACTATATCGGC 216
|.|||||.||.||||..|||||.||.||.|||||..|.||||||.|.||.
BPUM_1337___s 188 TTCATGATGGGGAAAAACTGTTCGTCAACAAAACCATTAACTATCTAGGT 237
BSNT_02404___ 217 GAGCTGAAGCGCGGAGATATCGTTATTATCAACGGTGAAACTT----CTA 262
|...|.||.||.||.||.|||||.|||||.||.|| .|||..| ..|
BPUM_1337___s 238 GGTGTCAAACGAGGTGACATCGTGATTATTAATGG-AAAAGATGGCCAGA 286
BSNT_02404___ 263 AAATCCATTATGTAAAAAGATTGATCGGAAAGCCTGGAGAAACCGTTCAA 312
||||.||||||||||||.||||.|||||....||.|||||.||..||.||
BPUM_1337___s 287 AAATTCATTATGTAAAACGATTAATCGGTCTCCCAGGAGACACGATTGAA 336
BSNT_02404___ 313 ATGAAGGATGACACGCTTTATATAAACGGTAAAAAAGTAGCCGAGCCTTA 362
|||||||||||.||.|||||.||.||.|||||||||||.|..||||||||
BPUM_1337___s 337 ATGAAGGATGATACACTTTACATTAATGGTAAAAAAGTTGATGAGCCTTA 386
BSNT_02404___ 363 CTTGTCTAAAA-ACAAGAAGGAAGCA---GAAAAACT-TG--GTGTCAGT 405
|.||||| |.||.||||.| || ||||.|.| || ||| || |
BPUM_1337___s 387 ----TTTAAAAGAGAACAAGGCA-CATGCGAAAGAGTATGAAGTG-CA-T 429
BSNT_02404___ 406 CTGACAGGAGACTTTGGACCGGTTAAGGTTCCGAAAGGCAAATACTTTGT 455
.|||||||.||.|||||.||.||.||.||.||||||..|.|.||||||||
BPUM_1337___s 430 TTGACAGGGGATTTTGGTCCAGTGAAAGTACCGAAAAACGATTACTTTGT 479
BSNT_02404___ 456 CATGGGAGATAACCGGCTGAATTCGATGGACAGCCGAAACGGGCTGGGAC 505
.|||||.||.||..|.||.|||||.|||||||||.||||.||.||.||||
BPUM_1337___s 480 GATGGGGGACAATAGACTCAATTCCATGGACAGCAGAAATGGACTTGGAC 529
BSNT_02404___ 506 TGATCGCGGAAGATCGAATTGTCGGCACATC-GAAGTTTGTCTTTTTCCC 554
|.||.|...|.|||||..|||||||.||||| ||| |||||.||.|||||
BPUM_1337___s 530 TCATTGAAAAGGATCGGGTTGTCGGGACATCAGAA-TTTGTTTTCTTCCC 578
BSNT_02404___ 555 GTTTAACGAAATGCGTCAAACAAAATAA 582
.|||..|||.||.||.||||||||||||
BPUM_1337___s 579 ATTTGGCGACATTCGGCAAACAAAATAA 606
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