Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02347 and BPUM_1296
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_02347___cheV.1.24716.seq
# -bsequence dna-align/BPUM_1296___cheV.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02347___cheV-BPUM_1296___cheV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02347___cheV-BPUM_1296___cheV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02347___cheV
# 2: BPUM_1296___cheV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 931
# Identity: 650/931 (69.8%)
# Similarity: 650/931 (69.8%)
# Gaps: 68/931 ( 7.3%)
# Score: 2189.5
#
#
#=======================================
BSNT_02347___ 1 ----------------------------TTGGATTCTGGTACAAATGAAT 22
|| ||.||||||||.|||||||
BPUM_1296___c 1 GTGGCTTTAAACAAACAAGAAATTTTACTT-GACTCTGGTACCAATGAAT 49
BSNT_02347___ 23 TAGAAATTGTGAAGTTTGGCGTGGGTGAAAATGCTTTCGGAATTAACGTC 72
|.||||||||||||||||...|.|||..||||...|||||.|||||||||
BPUM_1296___c 50 TGGAAATTGTGAAGTTTGAAATTGGTTCAAATCAATTCGGCATTAACGTC 99
BSNT_02347___ 73 ATGAAGGTAAGAGAAATTATTCAGCCTGTCGAGGTGACATCAGTGCCTCA 122
|||||.|||||||||||.||||||||.||.||||||||...|||.||.||
BPUM_1296___c 100 ATGAAAGTAAGAGAAATCATTCAGCCGGTTGAGGTGACGGTAGTACCGCA 149
BSNT_02347___ 123 CTCCCATCAGCATGTAGAAGGAATGATTAAACTCAGAGGAGAAATCCTCC 172
|||.|||||..||||||||||.|||||||...|..||||.||.||..|.|
BPUM_1296___c 150 CTCTCATCAAGATGTAGAAGGGATGATTAGTTTACGAGGCGAGATTTTAC 199
BSNT_02347___ 173 CTGTGATCAGTCTCTTCTCATTTTTTGGAGTAGAGCCTGA--AGGATCAA 220
|.||.||||.|||.||.||.||||||...||.|||.|.|| || |||.
BPUM_1296___c 200 CAGTCATCAATCTATTTTCCTTTTTTAATGTCGAGTCAGATCAG--TCAG 247
BSNT_02347___ 221 AAGATGAGAAATATATCGTGACTGAATTTAATAAACGGAAAATTGTTTTT 270
||.|.|||||||||||.|||||||||||.||..||||||||.||||.||.
BPUM_1296___c 248 AACAAGAGAAATATATTGTGACTGAATTCAACCAACGGAAATTTGTGTTC 297
BSNT_02347___ 271 CATGTCGGCTCTGTTTCTCAAATTCACAGAGTATCCTGGGAAGCGATTGA 320
|||...||..|.||.||.|||||||||.|.||...||||||||.||||||
BPUM_1296___c 298 CATACAGGAACGGTATCACAAATTCACCGCGTCAGCTGGGAAGAGATTGA 347
BSNT_02347___ 321 AAAGCCGACATCGTTAAATCAAGGAATGGAGCGGCACCTTACCGGGATTA 370
||||||.||..|..|.||||||||.|||||.||.||..|.|||||.||.|
BPUM_1296___c 348 AAAGCCAACTGCACTCAATCAAGGGATGGATCGTCATTTAACCGGTATCA 397
BSNT_02347___ 371 TTAAGCTCGAAGACCTGATGATCTTTTTGCCTGACTATGAAAAAATTATT 420
|||||||.||.||....|||||.||..|.||.||.|||||.|||||.|||
BPUM_1296___c 398 TTAAGCTTGATGAAAAAATGATTTTCCTTCCAGATTATGAGAAAATCATT 447
BSNT_02347___ 421 TATGACATTGAATCAGATTCAGGTGTTGACACGTATAATATGCATACCGA 470
|||||.||||||||.|.|||.||.||.||.||||||.|||||..| ||
BPUM_1296___c 448 TATGATATTGAATCCGCTTCTGGAGTAGAAACGTATCATATGTTT---GA 494
BSNT_02347___ 471 GGGCTT-----CGATGAAAGAAGAACTGATAAAAAGC-TTATCATTGTAG 514
.|| | .||.||.||||||||.|..||.|||| |||| .|.||.|
BPUM_1296___c 495 CGG--TGAGAAAGACGAGAGAAGAACAGGGAAGAAGCTTTAT-GTCGTTG 541
BSNT_02347___ 515 AGGACTCACCGCTTTTGATGCGCCTCTT-GCAGGATGAATTAAAAGAAGC 563
|.|||||.|||||..|.|||||..|.|| .|| .|||||||||..|||||
BPUM_1296___c 542 AAGACTCTCCGCTGCTCATGCGTTTATTAACA-AATGAATTAACCGAAGC 590
BSNT_02347___ 564 AGGGTACAACAACATCGCTTCGTTTGAAAATGGAAAAGAGGCATATGAAT 613
|||.||.||.|||||.|...|.||||||.|.||.|||.||||||||||..
BPUM_1296___c 591 AGGCTATAAAAACATTGTGACCTTTGAAGACGGGAAACAGGCATATGACC 640
BSNT_02347___ 614 ACATTATGAACCTTG-CTGAAAACGAA--ACTGATTTATCAGAACAGATT 660
||.|.|||.|||||| |.|.|||.||| |||| |..|||||.|.|||
BPUM_1296___c 641 ACGTGATGGACCTTGTCAGCAAAGGAATTACTG---TGACAGAAGAAATT 687
BSNT_02347___ 661 GATATGATCATCACTGATATTGAAATGCCAAAAATGGACGGACACAGGCT 710
||||||||.||.||.||||||||||||||.||||||||.||.|||.|..|
BPUM_1296___c 688 GATATGATTATTACAGATATTGAAATGCCTAAAATGGATGGTCACCGCTT 737
BSNT_02347___ 711 CACAAAGCTGCTGAAGGAAAATCC---GAAAAGCT-CAGATGTGCCGGTT 756
.||.||..||.||||||||||||| .|.|||.| || |.||..||
BPUM_1296___c 738 AACGAAATTGTTGAAGGAAAATCCTTTAACAAGTTCCA----TACCAATT 783
BSNT_02347___ 757 ATGATTTTCTCATCGTTAATTACGGATGATCTGCGTCACCGCGGCGAAGT 806
.|.||.|||||.|||.|.||.|||||.|||.|.||.||....||.|||..
BPUM_1296___c 784 CTCATCTTCTCTTCGCTCATCACGGAAGATTTACGCCATAAAGGGGAAAC 833
BSNT_02347___ 807 TGTAGGCGCAGATGAGCAAATCAGCAAGCCTGAGA-TCAGTGATTTGATT 855
..|.||.||||||||.|||||.||||||||.||.| ||| |.|..|.|||
BPUM_1296___c 834 AATCGGTGCAGATGATCAAATTAGCAAGCCAGAAATTCA-TCAACTAATT 882
BSNT_02347___ 856 AAAAAAGTGGAT-ACGTATGTTATTGAATAA 885
.|||||||.||| || |.|.||||..||
BPUM_1296___c 883 GAAAAAGTCGATCAC-TTTATTATCTAA--- 909
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