Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02339 and BPUM_1288
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:48
# Commandline: needle
# -asequence dna-align/BSNT_02339___ykwD.1.24716.seq
# -bsequence dna-align/BPUM_1288___ykwD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02339___ykwD-BPUM_1288___ykwD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02339___ykwD-BPUM_1288___ykwD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02339___ykwD
# 2: BPUM_1288___ykwD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity: 508/890 (57.1%)
# Similarity: 508/890 (57.1%)
# Gaps: 262/890 (29.4%)
# Score: 1452.0
#
#
#=======================================
BSNT_02339___ 1 ---ATGAAGAAAGCATTTATTTTATCTGCTGCCGCT----GCGGTTGGAT 43
|.|||||||.||||..||||.||.| |||| ||.|.||.|.
BPUM_1288___y 1 ATGAAGAAGAAATCATTCTTTTTTTCAG----CGCTAACGGCTGCTGCAC 46
BSNT_02339___ 44 TATTCACATTC----GGGGGCGTACAGCAAGCATCA-GCGAAAGAACTCT 88
|..||||.||| ||||.|.|.|||| |.| |||||.||.||
BPUM_1288___y 47 TCATCACGTTCACTGGGGGACATTCAGC-----TGATGCGAAGGAGCT-- 89
BSNT_02339___ 89 CCTGCCAGCCTGTGGTTACAGTAAAAACGGGGAACACAGTACA-----AA 133
.|.|||| |||.|.|.|..||| |||||| ||
BPUM_1288___y 90 -----TAACCTG----------AAACAAGTGATACA-AGTACAGCATCAA 123
BSNT_02339___ 134 AC-----ATGT-----CACTTAACGATGCAGTGAAAAAACTGCATA---- 169
|| ||.| || ||| |.||| ||||.|.||||
BPUM_1288___y 124 ACCATTGATCTTCATACA-TTA--GCTGC------AAAATTACATATCTC 164
BSNT_02339___ 170 TTAACACAAATATCAAAACGTTAAACGCTGCA-----AACGAAAAAGAGA 214
|| ||.||.|.||.|.|.||| ||| ||..|||||||||
BPUM_1288___y 165 TT----CAGATGTAAACAAGCTAA-----GCAAGTCGAATCAAAAAGAGA 205
BSNT_02339___ 215 -----------TTAAGCAGTTTCTTCAAAAACATGCGAAGCAATCTAACG 253
||||.||..||..|||| ||||..|| |||.
BPUM_1288___y 206 TCGAAGCTCTTTTAAACAAGTTGATCAA---------AAGCGGTC-AACC 245
BSNT_02339___ 254 TG-----------AAAGTTCAGGATGTTCAAAAGACAG-AAAC--GGCCA 289
|| ||||| |.|| ||||| || |||| .||.|
BPUM_1288___y 246 TGTTACTGGCACAAAAGT----GGTG----AAAGA-AGTAAACAAAGCAA 286
BSNT_02339___ 290 AACCTGCACAAAAGACTACTGAAAAAGCAGCTGCTGATCAAAAC--ACTG 337
||..||.|||||| || ||.||.||| ||| .||||| ||||
BPUM_1288___y 287 AAAATGAACAAAA----AC--AAGAATCAG----TGA-AAAAACCTACTG 325
BSNT_02339___ 338 CTTCTAAAGCA------CCCG------------------------CAACT 357
||||||||.|| ||.| |||..
BPUM_1288___y 326 CTTCTAAACCAAGTACGCCAGCAAAACAAAACACAAATAACAATACAAAA 375
BSNT_02339___ 358 GCTGA--AAAAACAAACA----CAACAACATCT----GCACCTTCATCTG 397
||||| |||||.|.||| ||||||.|.|| |||.||
BPUM_1288___y 376 GCTGACCAAAAAGACACAACGGCAACAAAAGCTGACAGCAGCT------- 418
BSNT_02339___ 398 TAAGTGCATACGAGAAAAAAGTTGTTGAACTTACAAATGCAGAAAGA--- 444
|.|.|||||..||.|||.||||.|||||.||||||| |.|||||
BPUM_1288___y 419 TGAATGCATTTGAAAAAGAAGTCGTTGAGCTTACAA----ACAAAGAGCG 464
BSNT_02339___ 445 --CAAAAACAAGGATTAAAGCCGCTTCAAATTGATGAAACGTTAAGCAAA 492
| |||.|||||||||||..|.|||....|||||..||..|||||||||
BPUM_1288___y 465 TGC-AAAGCAAGGATTAAAAGCACTTTCTGTTGATTCAAAATTAAGCAAA 513
BSNT_02339___ 493 TCTGCACGAGCAAAATCTCAGGATATGAAGGACAAAAACTACTTTGATCA 542
|||||.||.|||||||||||.||||||||.||.||||||||||||..|||
BPUM_1288___y 514 TCTGCTCGCGCAAAATCTCAAGATATGAAAGATAAAAACTACTTTTCTCA 563
BSNT_02339___ 543 CCAAAGCCCAACATACGGCTCACCGTTTGAT---ATGATGAAATCTTTCG 589
|..|||||||||.|||||.||.||.|||||| ||||.|.|| ||||
BPUM_1288___y 564 CACAAGCCCAACTTACGGATCTCCATTTGATCAAATGAAGCAA---TTCG 610
BSNT_02339___ 590 GAATCAGCTACAAAACAGCAGGTGAAAACATTG-CGAAGGGCCAAAAGA- 637
|.||||..||||||||||||||||||||||||| |.||||.| |||||
BPUM_1288___y 611 GGATCACTTACAAAACAGCAGGTGAAAACATTGCCCAAGGTC--AAAGAT 658
BSNT_02339___ 638 CACCAGAAGAAGTAGTAAAAGCTTGGATGAACAGTGAAGGACACAGA--- 684
|.||..|||||||.||||..||||||||||||||||||||.||.|||
BPUM_1288___y 659 CTCCTCAAGAAGTGGTAACTGCTTGGATGAACAGTGAAGGTCATAGAGCC 708
BSNT_02339___ 685 ------------AAAAACATTCTAAAC----GGGAGT--GTAATATTAA- 715
|||||| |.||.|| .||.|| ||.||.|.||
BPUM_1288___y 709 AATATCTTAAACAAAAAC--TATACACATATCGGTGTTGGTTATGTGAAA 756
BSNT_02339___ 716 -CTGTGTAA------------------------------- 723
||| ||||
BPUM_1288___y 757 TCTG-GTAACTACTGGACGCAGCAATTCATCGGAAAATAA 795
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