Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02286 and BPUM_1251
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_02286___ykrV.1.24716.seq
# -bsequence dna-align/BPUM_1251___mtnE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02286___ykrV-BPUM_1251___mtnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02286___ykrV-BPUM_1251___mtnE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02286___ykrV
# 2: BPUM_1251___mtnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1252
# Identity: 857/1252 (68.5%)
# Similarity: 857/1252 (68.5%)
# Gaps: 116/1252 ( 9.3%)
# Score: 2801.5
#
#
#=======================================
BSNT_02286___ 1 ATGAAATTTGAACAGTCTCATGTATTGAAGGAATTGCCTAAACAATTCTT 50
|||.|||||.|.|||||..||||||||||..||||.||.|.||||||.||
BPUM_1251___m 1 ATGGAATTTCAGCAGTCAGATGTATTGAAACAATTACCGACACAATTTTT 50
BSNT_02286___ 51 CGCTTCTCTGGTGCAGAAAGTG----AACCGAAAGCTCGCAGAAGG-ACA 95
.||.||.||.|||||.|||||| || |||| |.|..||||| .||
BPUM_1251___m 51 TGCATCCCTTGTGCAAAAAGTGCAGAAA---AAAG-TGGAGGAAGGCGCA 96
BSNT_02286___ 96 TGACGTTATCAATCTAGGACAGGGAAATCCAGATCAGCCGACTCCTGAAC 145
||..||||.|||.||||.|||||||||||.||||||||.|||||.|..|
BPUM_1251___m 97 -GATATTATTAATTTAGGGCAGGGAAATCCTGATCAGCCAACTCCCGTGC 145
BSNT_02286___ 146 ATATTGTTGAGGAGATGAAACGAGCTGTTGCTGATCCTGAGAATCATAAA 195
|.|||||..|.|.||||.||..|||.||.||..|.|||||.||||||.||
BPUM_1251___m 146 ACATTGTAAAAGCGATGCAAGAAGCGGTCGCAAAACCTGAAAATCATCAA 195
BSNT_02286___ 196 TATTCTTCTTTTCGCGGCTCATACCGTCTGAAGTCA------GCGGCTGC 239
||.||.||.||.|||||..|| ..|||.|.| ||.||.||
BPUM_1251___m 196 TACTCCTCATTCCGCGGAACA------GCGAAATTAAAAAAGGCTGCCGC 239
BSNT_02286___ 240 TGCATTTTACAAAAGAGAATACGGCATTGATCTGGATCCGGAAACCGAAG 289
|||.|||||..||||||||||.||..||...||.||||||...||.|||.
BPUM_1251___m 240 TGCCTTTTATGAAAGAGAATATGGGGTTACACTTGATCCGATGACGGAAA 289
BSNT_02286___ 290 TCGCTGTATTATTCGGCGGAAAAGCGGGTCTAGTCGAGCTCCCGCAATGC 339
|.||..|.|||||.|||||.||||||||.||.||.|||||.|||||||||
BPUM_1251___m 290 TTGCGATTTTATTTGGCGGGAAAGCGGGACTTGTTGAGCTGCCGCAATGC 339
BSNT_02286___ 340 TTGTTGAATCCCGGTGATACGATTTTAGTTCCCGATCCGGGTTATCCTGA 389
|||.|||||||.|||||||||.|..|.|||||.|||||.|||||||||||
BPUM_1251___m 340 TTGCTGAATCCGGGTGATACGCTCCTTGTTCCAGATCCAGGTTATCCTGA 389
BSNT_02286___ 390 TTACTGGTCGGGTGTCACACTTGCAAAAGCAAAGATGGAAATGATGCCGC 439
|||.|||||.||||.|...|||||...|||..||||||..|.||||||||
BPUM_1251___m 390 TTATTGGTCAGGTGCCGTGCTTGCTGGAGCTCAGATGGTGACGATGCCGC 439
BSNT_02286___ 440 TCGTAAAGGACAGGGCGTTTCTCCCTGATTACAGCAGCATAACCG----- 484
|..|..||.|.|..|..|||.|.|||||.| ||.||||
BPUM_1251___m 440 TTCTTGAGCAAAATGATTTTTTTCCTGACT--------ATGACCGGTTGC 481
BSNT_02286___ 485 CTGAAG----TAAGGGAACAGGCGAAATTGATGTATTTGAATTATCCGAA 530
||||.| ||| |.||.|.||.||.|||||||||||.||||||||.||
BPUM_1251___m 482 CTGAGGATGTTAA-GAAAAAAGCAAAGTTGATGTATTTAAATTATCCCAA 530
BSNT_02286___ 531 TAATCCGACTGGAGCTGTTGCTACTTCCGAG-------TTCTTTGAAGAT 573
.||||||||.|| |||||| ..|.|| ||.||||||||.
BPUM_1251___m 531 CAATCCGACAGG------TGCTAC-GGCAAGCCAATCATTTTTTGAAGAA 573
BSNT_02286___ 574 ACCGTG-CGTTTTGCGGCTGAAA----ACGGAATCTGCGTCGTTCACGAT 618
|||||| |.|| .||| ||| ||..|.||||.||.||.||.|||
BPUM_1251___m 574 ACCGTGACATT----CGCT-AAAGATCACAAACTCTGTGTTGTCCATGAT 618
BSNT_02286___ 619 TTTGCTTACGGCGCTGTAGGATTTGACGGCTGCAAGCCTTTAAGCTTTTT 668
|||||.|||||||...|.||.|||||.||....|||||..|.||||||||
BPUM_1251___m 619 TTTGCCTACGGCGGCATTGGGTTTGATGGGGAAAAGCCGATCAGCTTTTT 668
BSNT_02286___ 669 GCAGACTGAAGGTGCGAAGGATATCGGAATTGAAATTTACACGCTGTCAA 718
|||.||.||.||.|||||.||.|..||.|||||||||||.||..||||.|
BPUM_1251___m 669 GCAAACAGATGGAGCGAAAGAGACGGGGATTGAAATTTATACATTGTCTA 718
BSNT_02286___ 719 AAACGTATAATATGGCAGGATGGCGGGTTGGCTTTGCCGTCGGAAACGCT 768
||||||||||||||||.||.|||.|.||.||.|||||.|..|||||..|.
BPUM_1251___m 719 AAACGTATAATATGGCGGGCTGGAGAGTCGGATTTGCAGCAGGAAATCCG 768
BSNT_02286___ 769 TCGGTCATTGAAGCGATCAATCTTTATCAAGACCATATGTTTG--TCAGT 816
||.||.|||.|.|||||..|.||||||||.||.||..|||||| |||
BPUM_1251___m 769 TCTGTTATTAACGCGATTGAGCTTTATCAGGATCACCTGTTTGTTTCA-- 816
BSNT_02286___ 817 CTTTTCAGAGCGACTCAGGAGGCTGCAGCAGAGGCACTGTTAGCCGATCA 866
||.||.|.|||.|||||.||.||.||||..||.||..|||||..||||||
BPUM_1251___m 817 CTGTTTAAAGCCACTCAAGATGCGGCAGTGGAAGCTTTGTTAAGCGATCA 866
BSNT_02286___ 867 GACGTGTGTGGCA-GAGCAAAATGCCAGGTATGAGAGCAGGAGAAACGCT 915
.|||||.|| .|| |.|||.||||...|.|||||||...||.||||.|..
BPUM_1251___m 867 AACGTGCGT-ACAGGTGCAGAATGATCGATATGAGAAACGGCGAAATGTG 915
BSNT_02286___ 916 TGGATCACGGCATGCCGGGAAATCGGCTGGGATGTAACAGCTCCCGCAGG 965
|||||..|.||.|||..|||.||.||||||||.||.||.||.||....||
BPUM_1251___m 916 TGGATTGCTGCGTGCAAGGAGATTGGCTGGGAGGTCACTGCACCAAAGGG 965
BSNT_02286___ 966 TTCTTTTTTTGCATGGCTGCCTGTGCCTGAAGGCTATACTTCTGAGCAGT 1015
.||.||||||||.|||||....|||||.|||||.|||||.|||||
BPUM_1251___m 966 GTCATTTTTTGCTTGGCTAAAGGTGCCAGAAGGATATACATCTGA----- 1010
BSNT_02286___ 1016 TCTCAGATCTTTTGCTG-----------GAAAAAGCGAATGTGGCAGTTG 1054
||||||||||| ||.|||||..||||||..||.|
BPUM_1251___m 1011 ------ATCTTTTGCTGCCGTATTATTAGAGAAAGCACATGTGGTTGTGG 1054
BSNT_02286___ 1055 CGGCTGGAAACGGCTTCGGTGAAT-ATGGCGAGGGCTACGTCAGAGTCGG 1103
|..|.||.||.||.||.||| |.| |.||.||.||.|||||||||||.||
BPUM_1251___m 1055 CACCGGGGAATGGGTTTGGT-ACTCACGGTGAAGGATACGTCAGAGTAGG 1103
BSNT_02286___ 1104 ACTTTTAACAAGTGAAGAAAGACTTAAGGAAGCCGCTTATCGAATTG--G 1151
|||||||||||.|||.||..|..|.||.|||||||||.|.||||||| |
BPUM_1251___m 1104 ACTTTTAACAAATGAGGAGCGGTTAAAAGAAGCCGCTCAGCGAATTGCTG 1153
BSNT_02286___ 1152 CAAAC-TGAACCTGTTT-ACCCAAAAAAG-CATTGACAA---GACCTTAT 1195
| | ||||.|||||| | |||.||| ||||||||| ||
BPUM_1251___m 1154 C---CTTGAATCTGTTTGA---AAATAAGCCATTGACAACATGA------ 1191
BSNT_02286___ 1196 AA 1197
BPUM_1251___m 1191 -- 1191
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