Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02203 and BPUM_1203
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_02203___ykkD.1.24716.seq
# -bsequence dna-align/BPUM_1203___ykkD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02203___ykkD-BPUM_1203___ykkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02203___ykkD-BPUM_1203___ykkD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02203___ykkD
# 2: BPUM_1203___ykkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 338
# Identity: 224/338 (66.3%)
# Similarity: 224/338 (66.3%)
# Gaps: 43/338 (12.7%)
# Score: 672.0
#
#
#=======================================
BSNT_02203___ 1 ATGCTGCA-CTGGATCAGTTT----ATTGTGCGCGGGCTGTTTAGAAATG 45
||| | ||||.| ||| |||| |.||.|||...|||||||||
BPUM_1203___y 1 ATG----AGCTGGCT---TTTACTAATTG-GAGCAGGCATCTTAGAAATG 42
BSNT_02203___ 46 GCCGGCGTGGCCCTTATGAATCAATATGCGAAAGAAAAAAGC--GTGAAA 93
....|.|||.||.|.|||||||| ||.|.|||.|.|.|||| ||.|||
BPUM_1203___y 43 CTTTGTGTGACCATGATGAATCA--ATTCCAAAAAGACAAGCATGTCAAA 90
BSNT_02203___ 94 TGGGTGCTGTTGA-TCATT---GTTGGTTTTGCCGCTTCATTTTCCTTGC 139
|||.| ||.| ||||| |.|||.|| |||..|.|||||.|
BPUM_1203___y 91 TGGAT----TTTATTCATTGCGGCTGGCTT------TTCGATGTCCTTTC 130
BSNT_02203___ 140 TG--------TCGTACGCAATGGAAACCATTCCGATGGGAACGGCTTACG 181
|| ||.| ||.|||.|.||.|||||||||||||||||.||.|
BPUM_1203___y 131 TGATGTTGTCTCTT--GCGATGAACACGATTCCGATGGGAACGGCGTATG 178
BSNT_02203___ 182 CCGTCTGGACAGGAATTGGCACCGCCGGCGGGGCGCTTGTCGGCATCCTC 231
||.|.|||||.|||||.||..|.||.||.||.||..|.|||||.||.||.
BPUM_1203___y 179 CCATTTGGACTGGAATCGGAGCTGCTGGAGGCGCCATGGTCGGTATGCTT 228
BSNT_02203___ 232 TTTTACAAGGAGCAGAAAGACGCCAAACGGATCTTCTTTATCGCGTTGAT 281
||||||...|||..||||||.||.|||||.||.||.||||||||.|||||
BPUM_1203___y 229 TTTTACGGAGAGTCGAAAGATGCAAAACGTATTTTTTTTATCGCATTGAT 278
BSNT_02203___ 282 TTTATGCT-CAGCGGTTGGTTTGAAAATTCTGTCATAA 318
||||| || |.||.||.||.||||||||..|...||||
BPUM_1203___y 279 TTTAT-CTGCGGCAGTAGGATTGAAAATCATTGAATAA 315
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