Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01884 and BPUM_1047
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_01884___carB.1.24716.seq
# -bsequence dna-align/BPUM_1047___carB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01884___carB-BPUM_1047___carB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01884___carB-BPUM_1047___carB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01884___carB
# 2: BPUM_1047___carB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3272
# Identity: 2237/3272 (68.4%)
# Similarity: 2237/3272 (68.4%)
# Gaps: 370/3272 (11.3%)
# Score: 7405.5
#
#
#=======================================
BSNT_01884___ 1 ATGCCTAAAGA-CACCAGTATTTCAAGCATATTAGTAATCGGATCAGGCC 49
||||||||||| || .||.||...||.|||..||||.|||||.||.||.|
BPUM_1047___c 1 ATGCCTAAAGATCA-AAGCATACAAACCATTCTAGTCATCGGGTCTGGTC 49
BSNT_01884___ 50 CGATCATCATCGGGCAGGCGGCAGAATTTGATTATTCAGGAACTCAAGGG 99
|.||||||||.||.|||||.||||||||||||||.||||||||.|||||.
BPUM_1047___c 50 CAATCATCATTGGTCAGGCAGCAGAATTTGATTACTCAGGAACACAAGGA 99
BSNT_01884___ 100 TGCATCGCGCTGAAGGAGGAGGGCTACCGGGTGATTCTCGTCAACAGCAA 149
||.||.||.||.||.||.|||||||||...||||||.|.||.||.|.|||
BPUM_1047___c 100 TGTATGGCCCTAAAAGAAGAGGGCTACAAAGTGATTTTAGTGAATAACAA 149
BSNT_01884___ 150 TCCGGCGACAATTATGACCGATGAAGCCTTTGCTGATGAGATTTATTTTG 199
|||.||.||.||||||||.||.|||.|.|||||||||||.||.|||||||
BPUM_1047___c 150 TCCAGCAACCATTATGACAGACGAATCATTTGCTGATGAAATCTATTTTG 199
BSNT_01884___ 200 AGCCTCTGACAG------CAGAAAGCCTGACAGCCATCATTAAGAAAGAA 243
|.||.||..||| ||| |||||...|||||..|.||.|||
BPUM_1047___c 200 AACCGCTTTCAGTTGATTCAG------TGACAAGAATCATCGAAAAGGAA 243
BSNT_01884___ 244 CAGCCTGATGGGCTTCTTGCCAATTTAGGCGGTCAGACCGCGTTGAATTT 293
.|.||.|||||||||.|.|||||..|.|||||.||||||||.||.||..|
BPUM_1047___c 244 AAACCAGATGGGCTTTTAGCCAACCTTGGCGGACAGACCGCTTTAAACCT 293
BSNT_01884___ 294 AGCAGTGGAGCTTGAAGAAACGGGTGTTTTAAAGGAGCACGGCGTCAAGC 343
.||.||.||.||.|||.||.|.|||||..|.||..|.|||||.||.|..|
BPUM_1047___c 294 TGCTGTCGAACTAGAAAAAGCTGGTGTGCTGAAAAAACACGGGGTAACCC 343
BSNT_01884___ 344 TTCTCGGCACATCCGTTGAAACGATACAAAAAGGAGAAGACCGGGAAAAA 393
|.||.||.||.||.||||||||.||..||||.||.|||||.||.||.|||
BPUM_1047___c 344 TGCTTGGAACGTCAGTTGAAACAATTGAAAACGGTGAAGATCGAGAGAAA 393
BSNT_01884___ 394 TTCCGTTCGTTAATGAACGAATTGAATCAGCCCGTGCCAGAGAGTGAAAT 443
||||||.|..|.|||||..|.|||||..|.||.||||||||.||||||||
BPUM_1047___c 394 TTCCGTGCTCTCATGAAGCAGTTGAACGAACCTGTGCCAGATAGTGAAAT 443
BSNT_01884___ 444 TGTTGATAATGAAACCGACGCCATCCGGTTTGCGGAATCCATCGGTTTTC 493
|||.|||||||.|...||.|||.|.|..|||||..||....|.||.||.|
BPUM_1047___c 444 TGTGGATAATGCACAGGATGCCCTTCAATTTGCAAAAGAAGTAGGCTTCC 493
BSNT_01884___ 494 CCGTTATTATCAGACCTGCTTACACATTAGGCGGAAAGGGCGGAGGAATC 543
|.||.|||.|.||||||||.||.|||.|.|||||.||||||||.||||||
BPUM_1047___c 494 CAGTCATTCTAAGACCTGCCTATACACTTGGCGGTAAGGGCGGCGGAATC 543
BSNT_01884___ 544 GCCCCTGATA-AAGAAGCCTTTACAGCTATGATTAAACAGGCGCTATTAG 592
| |..|.|.| |||||||.||||.|.||.|.|||.||...||.||.||||
BPUM_1047___c 544 G-CTTTAACAGAAGAAGCGTTTAAACCTCTTATTGAAGGAGCCCTTTTAG 592
BSNT_01884___ 593 CAAGCCCGATCAATCAATGCCTTGTCGAAAAAAGCATTGCAGGCTTTAAA 642
|.|||||.||..||||.||..|.||.|||||||||||.||||||||||||
BPUM_1047___c 593 CGAGCCCAATTCATCAGTGTTTAGTTGAAAAAAGCATCGCAGGCTTTAAA 642
BSNT_01884___ 643 GAGATTGAATATGAAGTCATGCGTGACAG-CAATAACACATGCATTACCG 691
||..|.||||||||.||||||.|.|||.| ||| ||.||.||.|||||.|
BPUM_1047___c 643 GAAGTCGAATATGAGGTCATGAGAGACCGTCAA-AATACGTGTATTACGG 691
BSNT_01884___ 692 TCTGCAACATGGAAAATATCGATCCGGTCGGCGTGCATACAGGTGACTCT 741
|.||.||.|||||||||||||||||.||.||||||||||||||.|||||.
BPUM_1047___c 692 TTTGTAATATGGAAAATATCGATCCAGTTGGCGTGCATACAGGAGACTCG 741
BSNT_01884___ 742 ATCGTTGTGGCGCCTTCACAAACATTGACAGATGAAGACTATCAAATGCT 791
||.||.||.||.|||||.||||||||.||.|||.|.||.|||||||||||
BPUM_1047___c 742 ATTGTCGTTGCCCCTTCGCAAACATTAACGGATCAGGATTATCAAATGCT 791
BSNT_01884___ 792 GCGGACGGCTAGTCTGACCATCATTTCAGCACTTGATGTCGTAGGCGGCT 841
.||..|.||.||.||||..||||||||||||||.|||||.||.||.||.|
BPUM_1047___c 792 TCGTTCAGCGAGCCTGAAAATCATTTCAGCACTGGATGTAGTCGGGGGAT 841
BSNT_01884___ 842 GCAATATTCAATTCGCGCTTGATCCTTTCAGCAAGCAATATTACGTGATC 891
|.|||||.||||||||.||||||||..||||.||..||||.|..||.||.
BPUM_1047___c 842 GTAATATCCAATTCGCCCTTGATCCACTCAGTAAAGAATACTTTGTCATT 891
BSNT_01884___ 892 GAAGTGAATCCGCGTGTCAGCCGGTCATCGGCTCTCGCATCTAAAGCGAC 941
||.||.||.|||||.||.|||||.||.||.|||||.||.||.|||||.||
BPUM_1047___c 892 GAGGTAAACCCGCGGGTTAGCCGTTCGTCCGCTCTTGCCTCAAAAGCAAC 941
BSNT_01884___ 942 CGGTTATCCGATTGCAAAGATGGCTGCTAAACTGGCAGTCGGATACACAC 991
.||.|||||||||||.||.|||||.||.||.||.||.||.||.||.||||
BPUM_1047___c 942 AGGCTATCCGATTGCTAAAATGGCAGCAAAGCTTGCGGTAGGCTATACAC 991
BSNT_01884___ 992 TTGACGAGCTGAAAAATCCGCTCACAGGCTCAACTTACGCAAGCTTTGAA 1041
|.|||||.||.|||||.||||||||||||.|||||||.||.||.|||||.
BPUM_1047___c 992 TAGACGAACTCAAAAACCCGCTCACAGGCACAACTTATGCTAGTTTTGAG 1041
BSNT_01884___ 1042 CCGGCACTGGACTATGTGATCGTCAAATTTCCGCGCTGGCCGTTTGATAA 1091
||||||||.||.|||||..||||.|||||.||||||||||||||||||||
BPUM_1047___c 1042 CCGGCACTCGATTATGTCGTCGTGAAATTCCCGCGCTGGCCGTTTGATAA 1091
BSNT_01884___ 1092 ATTCAAAAACGCAGACCG-CAAGCTT-GGCACAAAAATGAAAGCCACCGG 1139
|||.|||.|.|||||.|| ||| || ||.|||||||||||.||.||.||
BPUM_1047___c 1092 ATTTAAACAGGCAGATCGTCAA--TTAGGTACAAAAATGAAGGCGACTGG 1139
BSNT_01884___ 1140 TGAAGTGATGGCGATTGAACGGAATTTAGAAGCAGCGATACAAAAGGCAG 1189
.|||||.|||||||||||.||.||||||||..||||.||.|||||.||.|
BPUM_1047___c 1140 CGAAGTCATGGCGATTGACCGTAATTTAGAGTCAGCCATCCAAAAAGCCG 1189
BSNT_01884___ 1190 CCGCGTCGCTTG-AATTAAAAAA-----TATCGGGACACACCTTCCAGAG 1233
..||.||.|||| ||||||||.| |.|| |||||.|||||
BPUM_1047___c 1190 TTGCCTCCCTTGAAATTAAAACAAAGGGTTTC------CACCTGCCAGA- 1232
BSNT_01884___ 1234 CTCAGCGGGTTG-----TCAATTGATACGCTATGGGA-------TTTG-G 1270
.||| |||||.|| || || |||| |
BPUM_1047___c 1233 --------ATTGAAAGATCAATCGA----CT----GAACAACTGTTTGAG 1266
BSNT_01884___ 1271 C-AATC---ACTCCGGATGACCGCAGATTTTTCGTTGTCATGGAGCT--- 1313
| |.|| ||.||.||.||.||..|.||.||||.||||||||||||
BPUM_1047___c 1267 CTAGTCAAAACACCAGACGATCGACGTTTCTTCGCTGTCATGGAGCTACT 1316
BSNT_01884___ 1314 ----------------GTTGAGCCGCAGCGTCTCGATTGATGACATCCAT 1347
||||| |||| ||||||
BPUM_1047___c 1317 TTCAAGACAGGAAACAGTTGA-----AGCG--------------ATCCAT 1347
BSNT_01884___ 1348 GAAAAAACAAAAATTGATCCGTTTTTCCTTCATACCTTTG----ACAACA 1393
.||...||.|||||.||||..|| ||||.|||.|.|| ||||.|
BPUM_1047___c 1348 CAAGCGACGAAAATCGATCGATT----CTTCTTACATGTGTTCAACAATA 1393
BSNT_01884___ 1394 TCATCA------------AATTGGAAAACCGCCTGATGGAAGCAGGGAGC 1431
|.|||| ||||..|.|||| ||| |||||.|
BPUM_1047___c 1394 TGATCACGCTAGTACAAGAATTAAAGAACC-----ATG-----AGGGAAC 1433
BSNT_01884___ 1432 GATCTCTCTTTTGAATTA----TTGAAGAAAGCAAAGGAAAAGGGATTCT 1477
|.|||| .||..| |||||.||.|.||||||.|||||.|||.
BPUM_1047___c 1434 GCTCTC------CAAGGACACCTTGAAAAAGGTAAAGGAGAAGGGCTTCC 1477
BSNT_01884___ 1478 CAGACGCAACGATTGCCTC-ACTGATCGGCAAAACAGAGGAAGAGGTGCG 1526
..||.|.|||||||| ||| .||.|..|||||.|..||.||||.|.|..|
BPUM_1047___c 1478 TTGATGAAACGATTG-CTCTTCTAACAGGCAATAGTGAAGAAGCGATTAG 1526
BSNT_01884___ 1527 CGC-GCTTCG-CAAGGAGATGGGCATTACGCCTTCCTTTAAAATCGTAGA 1574
|| |||||| ||||.|.|| |||||||||.||||.||||||||.||.||
BPUM_1047___c 1527 -GCAGCTTCGTCAAGAATAT-GGCATTACGGCTTCATTTAAAATTGTCGA 1574
BSNT_01884___ 1575 TACATGCGCGGCAGAGTTTGATGCGAAAACAAACTATTTTTACTCCACAT 1624
.|||||.||.||.||.||||||||.|||||.||||||||.||.|||||||
BPUM_1047___c 1575 CACATGTGCAGCGGAATTTGATGCAAAAACGAACTATTTCTATTCCACAT 1624
BSNT_01884___ 1625 ATTTCGGAGAAACCGATGGAGA-CATCAGCCGCAAAGAGAAAA------A 1667
|.||.||..|||..|||||||| |||| ||||||||| |
BPUM_1047___c 1625 ACTTTGGCAAAAGTGATGGAGAGCATC-------AAGAGAAAACAAAACA 1667
BSNT_01884___ 1668 ACGCGCGCTCATTATCGGATCAGGCCCGATTCGGATCGGCCAAGGCGTTG 1717
.||.||.|||||.||.||.||.||.||.|||||.||.||.|||||.||.|
BPUM_1047___c 1668 GCGTGCACTCATCATTGGCTCTGGTCCAATTCGAATTGGGCAAGGAGTCG 1717
BSNT_01884___ 1718 AATTTGATAATAGTGCTGTTCACGGTGTGCTGACACTGCAAGAGCTTGGA 1767
|.|||||..|||||||.||.||.||.||.||.||.||||||.|||||||.
BPUM_1047___c 1718 AGTTTGACTATAGTGCGGTGCATGGCGTTCTTACCCTGCAAAAGCTTGGT 1767
BSNT_01884___ 1768 TTCGAAACCATCATGATTAACAATAACCCGGAAACGGTCAGCACCGATTA 1817
||.|||||.||||||||.|||||.||.||.||.||||||||.||.|||||
BPUM_1047___c 1768 TTTGAAACGATCATGATGAACAACAATCCAGAGACGGTCAGTACGGATTA 1817
BSNT_01884___ 1818 TGAAATTGCGGACCGCCTGTATTTTGAACCAATGACAACGGAGCATATTG 1867
||||||.||.||.||..|.||||||||.||.||.|||...||.||.||..
BPUM_1047___c 1818 TGAAATCGCCGATCGTTTATATTTTGAGCCCATTACATTAGAACACATCT 1867
BSNT_01884___ 1868 TAAACGTGGCGG-AGCAG-GAAAATATTGATTTTGCAATTGTGCAATTCG 1915
|||||||.|.|| ||||| |.|| ||||||||||..||.||.|||||.|
BPUM_1047___c 1868 TAAACGTTGTGGAAGCAGAGCAA--ATTGATTTTGTCATCGTTCAATTTG 1915
BSNT_01884___ 1916 GCGGCCAAACTGCAATCAATGCTGCTGAAGCGC-TCGAAAAAGCCGGCAT 1964
||||.||.|||||.|||||||..||.|||| || |.||||||||.|||||
BPUM_1047___c 1916 GCGGACAGACTGCGATCAATGTAGCAGAAG-GCTTGGAAAAAGCGGGCAT 1964
BSNT_01884___ 1965 TACTCTTCTT-GGCACATCATTTCAAACGCTCGACGTGTTAGAGGATCGG 2013
||| .||.|| ||.|||||.|||.|.|||||.||.|.|.||||.|||||.
BPUM_1047___c 1965 TAC-GTTGTTAGGTACATCCTTTGACACGCTAGATGCGCTAGAAGATCGT 2013
BSNT_01884___ 2014 GATCAATTCTATCAGCTTCTTGACGAGCTGGGATTGAA------GCACGC 2057
|||...|||||||||||||||||.|| |.|||| .||.||
BPUM_1047___c 2014 GATTTGTTCTATCAGCTTCTTGATGA------ACTGAACCTTCCTCATGC 2057
BSNT_01884___ 2058 AAAAGGAGAAATTGCTTATACAAAAGAAGAAGC-----CGCTT--CAAAA 2100
.||||||||.|..|||.||.||||||||||||| |||.| .||||
BPUM_1047___c 2058 CAAAGGAGATACAGCTCATTCAAAAGAAGAAGCGCTCACGCATGCTAAAA 2107
BSNT_01884___ 2101 GCGAGTGAGATCGGCTATCCGGTGTTAATCCGCCCATCTTACGTTATCGG 2150
|| |||||.|||||.||||||||.||||||||.||.||.||.||
BPUM_1047___c 2108 GC-------ATCGGTTATCCTGTGTTAATTCGCCCATCGTATGTCATTGG 2150
BSNT_01884___ 2151 CGGAATGGGCATGATCATTGTTGACTCGCAAGCCCAGCTTTCTCAG--CT 2198
.||||||||.|||||..||||..|.||..||||.|| |||..|.| ||
BPUM_1047___c 2151 TGGAATGGGAATGATGGTTGTCCAGTCAGAAGCGCA--TTTGACGGCACT 2198
BSNT_01884___ 2199 GCTGAATGATGAGGACAG--CA--TGCCATATCCGATTTTGATTGATCAA 2244
.|| ||||.| |.||| || |||||||.||.|||||.||||||.|.
BPUM_1047___c 2199 ACT---TGATCA-GCCAGATCATTTGCCATACCCCATTTTAATTGATGAG 2244
BSNT_01884___ 2245 TATGTGTCTGGAAAGGAAGTCGAAATTGATTTGATTTCCGACGG-----C 2289
|||||..|||||||.|||||||||.|.|||.|.|||||.||||| |
BPUM_1047___c 2245 TATGTCACTGGAAAAGAAGTCGAAGTGGATCTAATTTCTGACGGTAAAAC 2294
BSNT_01884___ 2290 GAGGATGTCTTTATCCCGAC-ATATACC---GAGCATATTGAACGGGCAG 2335
|| .|||.|||||.|| || | |||||||||||....||.|
BPUM_1047___c 2295 GA-----CCTTCATCCCAACGAT----CGTGGAGCATATTGAGAAAGCGG 2335
BSNT_01884___ 2336 GTGTCCATTCAGGGGACAGCTTTGCCATTCTTCCC--GGGCCGTCCATCA 2383
|||||||||||||.||||||||||||| ||||.|| |.|.| |||||||
BPUM_1047___c 2336 GTGTCCATTCAGGTGACAGCTTTGCCA-TCTTGCCAAGTGTC-TCCATCA 2383
BSNT_01884___ 2384 CGAGCGGGCTG--------CAGC-AGGGCATGAAAGA-TGCGGCACAAAA 2423
|.|..| |||| ||.|||| | ||||.|..||.|
BPUM_1047___c 2384 -----GTGAAGACATCAAACAGCAAGTGCAT-----ATTGCGTCCGAACA 2423
BSNT_01884___ 2424 AATTGCCCGA--AAACTTTCATTTAAAGGCATCATGAACATTCAATTTGT 2471
|||.| ||| |||.|..|.|||||.|||||.|||||.||.||||||||
BPUM_1047___c 2424 AATAG--CGAAGAAATTAGCGTTTAAGGGCATTATGAATATCCAATTTGT 2471
BSNT_01884___ 2472 GATCGACAATGGAAACA--TACTCGTTCTTGAAGTGAATCCGAGAGCGAG 2519
|||| .||.||.|.|| ..||.||.||.||||||||||||.|.||.||
BPUM_1047___c 2472 GATC--AAAGGGGATCAGGCGCTTGTACTAGAAGTGAATCCGCGGGCAAG 2519
BSNT_01884___ 2520 CCGCACGGTTCCTGTCGTCAGCAAAGTAATGGGCGTTCCGATGATTCCGC 2569
|||.||.|||||.||.||||||||||||||||||.||...||||||||||
BPUM_1047___c 2520 CCGGACCGTTCCAGTTGTCAGCAAAGTAATGGGCATTGACATGATTCCGC 2569
BSNT_01884___ 2570 TCGCCACACGTCTGCTGGCGGGAGCGTC-CTTAAAAGATCTAGATCCGGC 2618
|.||.||.|...|..|.|||||.|||.| ||| .|.||.||..|.||.|.
BPUM_1047___c 2570 TTGCGACTCAATTATTAGCGGGTGCGACGCTT-GACGAACTGAACCCTGT 2618
BSNT_01884___ 2619 A--GTTCAAAATCATCA---TGGAGTTGCCGTGAAGTTCCCTGTTTTTTC 2663
| | ||||.|| | .|||...||.||.||.|||||.||.||.||
BPUM_1047___c 2619 AACG---AAAAACA--AAGGGGGAACAGCGGTCAAATTCCCAGTCTTCTC 2663
BSNT_01884___ 2664 TTCTCATGCGATCCAGGATGTGGATATCAAGCTTGGGCCGGAAATGAAAT 2713
.||.|||||.||.||.|||.|.||..|.|||||....||.|||||||||.
BPUM_1047___c 2664 ATCACATGCTATTCAAGATATTGACTTAAAGCTGACACCTGAAATGAAAG 2713
BSNT_01884___ 2714 CAACGGGAGAAGGCATGTGTGT---------CGCATATGATTCTAACAGC 2754
|.||.||||||||.|||||||| ||| |.|| |||
BPUM_1047___c 2714 CGACAGGAGAAGGAATGTGTGTAGGCAAGAACGC--------CGAA-AGC 2754
BSNT_01884___ 2755 GCCTTGAAAAAAATCTATACAAGAG----TCTGGAGTCAAAAAGGAAGCA 2800
||||||||||||.|.|.| |.| |||||..|||.|||||.||||
BPUM_1047___c 2755 GCCTTGAAAAAAGTGTTT----GCGTCGATCTGGCATCAGAAAGGCAGCA 2800
BSNT_01884___ 2801 TTTATTTGCAAAACG----------TTCCGGAAGATGTGCAGGAGTTAGC 2840
|||||..||||.| || ||.||||| .|||
BPUM_1047___c 2801 --TATTTATAAAAGGCAATGAACAATT--GGTAGATG---------AAGC 2837
BSNT_01884___ 2841 AGAAAACGCAGGTTTTACCGTTCATGAAGGGACA--TTTGCCTCATGGAT 2888
|.||.|.|||||.|||..||| .||.|.|||.| ||||.|.|.|||.|
BPUM_1047___c 2838 AAAACATGCAGGCTTTGACGT--CTGGACGGATAGCTTTGACACTTGGCT 2885
BSNT_01884___ 2889 GGAACAAGAAGAAAAATCGCTCCACATCAATCTGAGCGGTTCTGAAGAAG 2938
|.||.|.|||||.|||.|.||.||.|||.||.|..|||....||||||.|
BPUM_1047___c 2886 GCAAAACGAAGATAAAACCCTTCATATCCATTTAGGCGAAGATGAAGAGG 2935
BSNT_01884___ 2939 CACGCATAG---AACGTTTGGAAGCCATGACGCACGGCATCCCCGTCTTT 2985
|| |.|| ||||..|..||||..|.|||||.|||.|||..|||.||
BPUM_1047___c 2936 CA---AAAGAGCAACGCGTAAAAGCACTCACGCATGGCGTCCAGGTCCTT 2982
BSNT_01884___ 2986 ACAGAAGAAGAAACTGTGCGGGCGTTTTTACAA-----------AGCGGT 3024
||.|||.|.|||||.||.|..||.||..|.||| ||..||
BPUM_1047___c 2983 ACCGAATATGAAACAGTTCAAGCATTCCTGCAAGGGAAAAATGGAGATGT 3032
BSNT_01884___ 3025 TCTGGCCATCCGCAGCCTGTATCTCTCAAAGACCTCTATAAAAAGGAAGT 3074
||| .||.|||||.|||.||||..|.||.|||||||||||
BPUM_1047___c 3033 -------ATC----ACCAGTATCGCTCCAAGAATTATACAAAAAGGAAGT 3071
BSNT_01884___ 3075 ---GGCATCATGCACACAGTGA 3093
|||||.|
BPUM_1047___c 3072 GACGGCATGA------------ 3081
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