Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01883 and BPUM_1046
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_01883___carA.1.24716.seq
# -bsequence dna-align/BPUM_1046___carA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01883___carA-BPUM_1046___carA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01883___carA-BPUM_1046___carA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01883___carA
# 2: BPUM_1046___carA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1127
# Identity: 746/1127 (66.2%)
# Similarity: 746/1127 (66.2%)
# Gaps: 130/1127 (11.5%)
# Score: 2376.0
#
#
#=======================================
BSNT_01883___ 1 ATGGAAGGTTATTTAGTGTTAGAAGATGGGACATCGTTCAGCGGCGAGCT 50
|||.|||||||||||...|||||||||||..|.||.||....||.||.||
BPUM_1046___c 1 ATGAAAGGTTATTTAAATTTAGAAGATGGAGCCTCTTTTGAAGGAGATCT 50
BSNT_01883___ 51 GGACGGCCATGA-AAACTG----TACGGGAGAAGCTGTTTTTTTCACAGG 95
|.||.|| ||.||| .||.||.||||..|||||.||.|||||
BPUM_1046___c 51 -----GACAGGAGAAGCTGGCAAGACAGGTGAAGTGGTTTTCTTTACAGG 95
BSNT_01883___ 96 AATGACAGGCTACCAGGAAGTGCTGACAGATCCATCGTATAAGGGACAGA 145
.||||||||.|||||.||.||.||.|||||.||.||.||||||||.||.|
BPUM_1046___c 96 GATGACAGGTTACCAAGAGGTACTCACAGACCCTTCCTATAAGGGGCAAA 145
BSNT_01883___ 146 TTATTGTATTTACCTACCCGCTGATTGGCAACTACGGCATAAATGAAAAG 195
|.|||||.||.||.||.|||||.||.||.||.||||||||.|||.|..|.
BPUM_1046___c 146 TCATTGTTTTCACATATCCGCTTATCGGAAATTACGGCATTAATCATGAA 195
BSNT_01883___ 196 GACTTTGAAAGCAAGAAACCGCAAGTAAAAGCAGCGGTTGTCTATGAGGC 245
||||||||.||.||.|||||.|||||.|||||.|..|||||.|||||.||
BPUM_1046___c 196 GACTTTGAGAGTAAAAAACCACAAGTGAAAGCTGTTGTTGTGTATGAAGC 245
BSNT_01883___ 246 GTGTGATCACTTTTCT---CATTATGAAGCGGTATACAGCCTCAAGGAGT 292
...||||||.|||||| |||..||.|||||| .|||.|.||.||.|
BPUM_1046___c 246 AGCTGATCATTTTTCTCACCATCTTGCAGCGGT---TAGCTTAAAAGATT 292
BSNT_01883___ 293 ATTTACAGAAATGGAACATTCCGCTGTTAACCCATGTTGATACGAGGGCT 342
||||.|||||.||||||||.|||||..|.||.|||...|||||..|.||.
BPUM_1046___c 293 ATTTGCAGAAGTGGAACATCCCGCTTCTGACACATACAGATACACGTGCA 342
BSNT_01883___ 343 GTCGTGAAGAAAATCCGGGCAAACGGGACGATG-----GGTGCAACAGTC 387
||||||.|.||.|||||||||||.||||||||| .||| |.||||
BPUM_1046___c 343 GTCGTGCAAAACATCCGGGCAAATGGGACGATGAACGCTGTG-ATCAGT- 390
BSNT_01883___ 388 ACAGCCTCTAAAGAAGGAGCTGAGATG-----------------GCCCTT 420
|.||||| |||.|.
BPUM_1046___c 391 --------------------TTAGATGAAAACGAAACACCGTCTGCCATG 420
BSNT_01883___ 421 CAACCAGAGAATGTGGCAGAGCAGGCTTCAGCCCAGGAAATCAGCACATT 470
.|||.|||.|||||||..|..||||...|||...|.|||||| .|||.|
BPUM_1046___c 421 AAACAAGACAATGTGGTTGCACAGGTGACAGAGGACGAAATC--TACACT 468
BSNT_01883___ 471 C--GGCGACGGGAATAAACATATCGCTCTCATTGATTTTGGCTATAAAAA 518
| |||..|||..|..|||||.|.||.||.|||||||||||||.||||||
BPUM_1046___c 469 CAAGGCAGCGGCGAGGAACATGTAGCGCTGATTGATTTTGGCTTTAAAAA 518
BSNT_01883___ 519 GTCAATCGCATCATCACTTGTCAAAA----GAGGCTGCAAGGTTACTGTG 564
.|||||.|||...||.|||| || |.|||||.||.||.||.||.
BPUM_1046___c 519 ATCAATAGCAGATTCGCTTG----AAGCGCGCGGCTGTAAAGTAACCGTT 564
BSNT_01883___ 565 GTGCCATAC---CAGC---AAATGGAGGCCGTATACAACATCAAACCCGA 608
.|.||.||| |||| |||.||.|...|.|| |.||.||.||
BPUM_1046___c 565 ATTCCGTACAAACAGCTGGAAAAGGTGTTTGAAT------TGAAGCCAGA 608
BSNT_01883___ 609 TGGCATTGTGCTATCGAACGGACCTGGAGATCCGAAAGCAATCCAGCCAT 658
||...|..|||||||.||.||.|||||||||||.|||.||||..||||||
BPUM_1046___c 609 TGCGGTACTGCTATCAAATGGCCCTGGAGATCCCAAAACAATGAAGCCAT 658
BSNT_01883___ 659 ATTTAGGAAAGA-TCA--AAAGCATCATCAGCCGCTTT-CCGACTCTCGG 704
|||||..||..| ||| |.|.|||.||.| |||| |||||.||.||
BPUM_1046___c 659 ATTTAAAAACCATTCATGAGATCATGATGA----CTTTCCCGACACTTGG 704
BSNT_01883___ 705 CATTTGTCTCGGACATCAGCTGATCGCGCTCGCGTTCGGAGGGAATACTT 754
.||.||..|.||.|||||..|.|||||.||.||..|.||.|||.||||.|
BPUM_1046___c 705 GATCTGCTTAGGTCATCAATTAATCGCTCTTGCACTTGGCGGGGATACGT 754
BSNT_01883___ 755 TTAAGCTGCCATTCGGACACAGGGGAGCTAATCATCCGGT-CATCGACCG 803
.|||.||.|||||.||.|||.|.||.||.|||||.||.|| ||
BPUM_1046___c 755 ATAAACTACCATTTGGCCACCGCGGGGCGAATCACCCTGTACA------- 797
BSNT_01883___ 804 TGAGA--------CGAAACGGGTCTTTATGACAAGCCAAAACCACAGCTA 845
||| |.|||||.||.||.|||||.||.||.||.||||||||
BPUM_1046___c 798 --AGATACAGAATCCAAACGTGTTTTCATGACGAGTCAGAATCACAGCTA 845
BSNT_01883___ 846 TGTGGTTGATGAACAGTCGATTAATG---AAGAAGAGCTCACGATCAGAT 892
|||.||..|||||.|....||.|||| ||||||.| .||| |.|.||
BPUM_1046___c 846 TGTAGTGAATGAAAAAAGCATGAATGACAAAGAAGTG--GACG-TGAAAT 892
BSNT_01883___ 893 TTCATCATGTCAATGATACGTCAGTTGAAGGGCTTGCCCATAAA---AAA 939
|.|.|||||||||||||...||.||.||||||.|....|||||| ||.
BPUM_1046___c 893 TCCTTCATGTCAATGATGGATCTGTCGAAGGGTTCATTCATAAAGAGAAG 942
BSNT_01883___ 940 CTGCCA----GTCATGAGTGTGCAATTCCACCCGGAGGCCCATCCCGGAC 985
|| || |||| ||.|||||.|||||.||.||.||.||.||.|
BPUM_1046___c 943 CT--CATTATGTCA-----GTTCAATTTCACCCAGAAGCACACCCAGGGC 985
BSNT_01883___ 986 CGGCGGAAAGCGAATGGGTTTTTGATGATTATCTAAAGAATGTGATACCA 1035
|.||.|||||.||||||||.||.|||||||.|.|..||||.||||.||.|
BPUM_1046___c 986 CTGCTGAAAGTGAATGGGTATTCGATGATTTTATTGAGAAAGTGAAACAA 1035
BSNT_01883___ 1036 GCAAGGAGAGAAATCGCGCATGCCTAA 1062
||||||||||||.||||.|||||||||
BPUM_1046___c 1036 GCAAGGAGAGAAGTCGCACATGCCTAA 1062
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