Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01728 and BPUM_0960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_01728___hemY.1.24716.seq
# -bsequence dna-align/BPUM_0960___hemY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01728___hemY-BPUM_0960___hemY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01728___hemY-BPUM_0960___hemY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01728___hemY
# 2: BPUM_0960___hemY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1476
# Identity: 1033/1476 (70.0%)
# Similarity: 1033/1476 (70.0%)
# Gaps: 126/1476 ( 8.5%)
# Score: 3435.0
#
#
#=======================================
BSNT_01728___ 1 ATGAGTGACGGCAAAAAACATGTAGTCATCATCGGCGGCGGCATTACCGG 50
|||..||||....|||||||..|.||||||||.|||||.|||||.||.||
BPUM_0960___h 1 ATGCATGACAATCAAAAACACCTTGTCATCATTGGCGGTGGCATCACTGG 50
BSNT_01728___ 51 TTTAGCCGCCGCCTTCTATATGGAAAAAGAAATCAAAGAAAAGAATCTGC 100
|||||||||||||||||||.|||||||.|||.||.|.|||||...|||.|
BPUM_0960___h 51 TTTAGCCGCCGCCTTCTATTTGGAAAAGGAAGTCGAGGAAAAAGGTCTTC 100
BSNT_01728___ 101 CGCTTGAAATGACGCTTGTTGAGGCAAGTCCGAGAGTCGGCGGAAAAATC 150
||.||.||||..|.|||.||||.||.||.||.||..|.||.||||||||.
BPUM_0960___h 101 CGATTCAAATATCACTTATTGAAGCGAGCCCTAGGCTAGGTGGAAAAATA 150
BSNT_01728___ 151 CAGACTGTCAAGAAGGACGGCTATATCATCGAAAGAGGGCCAGACTCATT 200
||.||..|..|.||.||||||||.|||||.|||.|.||.||.||.|||||
BPUM_0960___h 151 CAAACATTATATAAAGACGGCTACATCATTGAACGTGGACCTGATTCATT 200
BSNT_01728___ 201 TCTGGAACGAAAGAAAAGCGCCCCGCAGCTTGTTAAAGACTTAGGTCT-- 248
|.|.|||.|||||...||.|..||||||||||..|||||..|.|||||
BPUM_0960___h 201 TTTAGAAAGAAAGGTCAGTGGGCCGCAGCTTGCAAAAGATGTCGGTCTGT 250
BSNT_01728___ 249 -TGAGCATTTGCTTGTCAACAATGCGACCGGACAATCCTATGTGCTTGTA 297
.||.|| |||.|||||.||||..||.||.|||.|.|||||.||.||.
BPUM_0960___h 251 CCGATCA---GCTCGTCAATAATGAAACTGGGCAAGCGTATGTACTGGTC 297
BSNT_01728___ 298 AACCGCACCCTGCATCCAATGCCGAAGGGCGCTGTAATGGGGATACCGAC 347
||....|..||.||.||.|||||.||.||.|||||.||||||||.||.||
BPUM_0960___h 298 AATGAAAAGCTTCACCCGATGCCAAAAGGTGCTGTTATGGGGATTCCAAC 347
BSNT_01728___ 348 AAAAAT-TGCGCCGTTTGTTTCTACGGGTCTGTTTTC-TTTGTCTGGGAA 395
..|||| .|| ||.|||.||.|.||.|||||.||||| .||| |.||.||
BPUM_0960___h 348 TCAAATCAGC-CCATTTATTACAACTGGTCTTTTTTCAGTTG-CGGGAAA 395
BSNT_01728___ 396 GGCCAGAGCTGCAATGGATTTCATCCTGCC----TGCAAGCAAAACAAAG 441
.||.||.||.||.|||||||||.|.||||| .|||||| |.|||
BPUM_0960___h 396 AGCAAGGGCGGCGATGGATTTCGTACTGCCAAAAAGCAAGC-AGACA--- 441
BSNT_01728___ 442 GATGATCAGTCATTGGGAGAATTCTTCCGCAGACGTGTCGGAGATGAAGT 491
||.||||||||..|.||.|||||.||..|.|||||||||||.||||||||
BPUM_0960___h 442 GAAGATCAGTCGCTCGGTGAATTTTTTAGAAGACGTGTCGGTGATGAAGT 491
BSNT_01728___ 492 GGTCGAGAACTTAATCGAGCCGCTTCTATCAGGGATCTATGCAGGCGACA 541
.||.|||||.|||||.|||||||||||||||||.||.||||||||.||.|
BPUM_0960___h 492 AGTTGAGAATTTAATTGAGCCGCTTCTATCAGGCATTTATGCAGGGGATA 541
BSNT_01728___ 542 TTGACAAGCTCAGCCTGATGTCGACATTCCCGCAATTTTACCAGACAGAA 591
|||||...||.|||.|.||||||||.||||||||||||||.||.||||||
BPUM_0960___h 542 TTGACCGTCTGAGCTTAATGTCGACCTTCCCGCAATTTTATCAAACAGAA 591
BSNT_01728___ 592 CAAAAGCATAGAAGCCTGATTCTCGGCATGAAAAAAACAAGGCCTCAAGG 641
|||||||||.|.||..|||||||.||.|||||||||.||..||..| |.|
BPUM_0960___h 592 CAAAAGCATCGCAGTTTGATTCTTGGGATGAAAAAATCACAGCAGC-ATG 640
BSNT_01728___ 642 CTCAGGC-CAGCAGCTGACGGCAAAGAAGCAAGGCCAGTTCCAGACTTTG 690
|..|.|| |||||..||||.||.||.||.|||||.||||||||.|| |
BPUM_0960___h 641 CGAAAGCGCAGCAAGTGACTGCGAAAAAACAAGGACAGTTCCAAAC---G 687
BSNT_01728___ 691 -TCAACC--GGATTGCAAACCCTTGTTGAAG-AGATCGAAAAGCAGTTAA 736
||||.| ||||||||..|.|||||.|||| || |.||||...||.|.|
BPUM_0960___h 688 ATCAATCAAGGATTGCAGTCGCTTGTGGAAGCAG-TAGAAAGTAAGCTCA 736
BSNT_01728___ 737 AGCTGACGAAGGTGTATAAAGGCACAAAAG----------TGACCAAGCT 776
|||||||.|.|||.||||||||.||||||| |||..||.|.
BPUM_0960___h 737 AGCTGACAACGGTCTATAAAGGGACAAAAGTCAAACAAATTGAAAAAACG 786
BSNT_01728___ 777 CAGCCGTGGCGGCTCTGG-TTACTCGCTCGAATTGGATAACGGCGTC--A 823
.| |||.||||.||| |||| ||||.||.|.|| ||| |
BPUM_0960___h 787 GA----TGGAGGCTATGGCTTAC-------AATTAGACAGCG--GTCAAA 823
BSNT_01728___ 824 CACTTGATGCTGATTCAGTAATTGTGACTGCTCCGCATAAAGCGGCTGCG 873
|.|||..|||.|||||||..|||||.||..||||||||.||.||
BPUM_0960___h 824 CGCTTTTTGCCGATTCAGCCATTGTCACGACTCCGCATCAATCG------ 867
BSNT_01728___ 874 GGAATGCTTTCTGAGCTTCCT-----------GCCA---TTTCTCATTTG 909
||...|||...|.||||| ||.| | |||||
BPUM_0960___h 868 ---ATTTATTCCATGTTTCCTAAAGAAGCAGGGCTAGAGT-----ATTTG 909
BSNT_01728___ 910 AAAAATATGCACTCCACATCGGTGGCAAATGTCGCTTTAGGTTTCCCTGA 959
.|..|.|||..|||.||.||.||.||||..||.||..|.||||| |.|
BPUM_0960___h 910 CATGACATGACCTCTACTTCTGTTGCAACAGTAGCACTCGGTTT---TAA 956
BSNT_01728___ 960 AGGCTCCGTCGA-GATG--------GAGCATGAGGGCACGGGTTTTGTTA 1000
| |..|| |||| |||.||||.|||||.||||||||.|
BPUM_0960___h 957 A------GATGAGGATGTTCATAATGAGTATGATGGCACTGGTTTTGTCA 1000
BSNT_01728___ 1001 TTTCAAGAAACAGTGACTTTGCGATCACTGCCTGTACGTGGACGAATAAA 1050
|.||||||||||||||.||..|.||.||.||||||||.|||||.||.|||
BPUM_0960___h 1001 TCTCAAGAAACAGTGATTTCTCTATTACGGCCTGTACATGGACAAACAAA 1050
BSNT_01728___ 1051 AAATGGCCGCACGCAGCTCCGGAAGGCAAAACGCTGCTTCGGGCATATGT 1100
|||||||||||..|.||||||.||||.||||||||..|.||.||.|||||
BPUM_0960___h 1051 AAATGGCCGCATACTGCTCCGAAAGGAAAAACGCTATTGCGTGCGTATGT 1100
BSNT_01728___ 1101 CGGAAAAGCTGGAGACGAATCCATTGTCGATCTATCAGATAATGACATTA 1150
.||.||.|||||.||||||||.||||||||.|..|||||.|.|.|.||..
BPUM_0960___h 1101 AGGGAAGGCTGGCGACGAATCAATTGTCGAGCAGTCAGACAGTCAAATCG 1150
BSNT_01728___ 1151 TCAACATTGTGTTAGAAGACTTAAAGAAAGTCATGAACATAAACGGCGAG 1200
|||.|||||||.|||||||.|||||||||.|||||.|.||.||.|..||.
BPUM_0960___h 1151 TCAGCATTGTGCTAGAAGATTTAAAGAAAATCATGGATATTAAAGCAGAT 1200
BSNT_01728___ 1201 CCGGAAATGACATGTGTCACCCGATGGCATGA-AAGCATGCCGCAGTACC 1249
||.|||.||||....||.||.||.||| |.|| |||.||||||||.||.|
BPUM_0960___h 1201 CCAGAATTGACGACAGTGACTCGCTGG-AAGACAAGTATGCCGCAATATC 1249
BSNT_01728___ 1250 ATGTCGGCCAT----AAGCAGCGTATCAAGGAGC-TGCGTGAAGCACTT- 1293
|.|||||.||| |||| |.|.|| ||.| ||||.|||.|..||
BPUM_0960___h 1250 ACGTCGGTCATCAGAAAGC--CATTTC---GAACATGCGAGAAACGTTTA 1294
BSNT_01728___ 1294 -GC-ATCTGCGTATCCGGGTGTTTATATGACAGGCGCTTCTTTCGAAGGT 1341
|| || |.|||||.|||||||||||.|||||.|||.||||.||||||
BPUM_0960___h 1295 AGCAAT---CATATCCTGGTGTTTATATTACAGGTGCTGCTTTTGAAGGT 1341
BSNT_01728___ 1342 GTCGGCATTCCCGACTGCATTGATCAAGGAAAAGCTGCCGTGTCTGACGC 1391
|||||.||.||.||.||.|||||||||||||||||.|||.|.||.||.||
BPUM_0960___h 1342 GTCGGAATCCCTGATTGTATTGATCAAGGAAAAGCCGCCATCTCAGAGGC 1391
BSNT_01728___ 1392 ----GCTTACCTATTTATTCAGCTAA 1413
.|.||.||||| |||| |||
BPUM_0960___h 1392 TGTATCGTATCTATT--TTCA--TAA 1413
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