Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05945 and BPUM_0923
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_05945___yxkF.1.24716.seq
# -bsequence dna-align/BPUM_0923.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05945___yxkF-BPUM_0923.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05945___yxkF-BPUM_0923.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05945___yxkF
# 2: BPUM_0923
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1099
# Identity: 501/1099 (45.6%)
# Similarity: 501/1099 (45.6%)
# Gaps: 428/1099 (38.9%)
# Score: 864.5
#
#
#=======================================
BSNT_05945___ 1 ATGAAATCGCTGCTGGCTATTTATCCCGGTTCGATTGTGTCTGAGGAGCT 50
|..|
BPUM_0923 1 ----------------------------------------------ATGT 4
BSNT_05945___ 51 TTGCATAAGGGAAGGCTGTCTATGTTTTTTTGATGAGAGCA----ATCAG 96
|.|.|.||...|||..|||.||.| ||||||| |||||
BPUM_0923 5 TAGAAAAATTAAAGCATGTTTACG----------GAGAGCATATCATCAG 44
BSNT_05945___ 97 AGGTATATCTCCATTCCGAAAACAGA-GATCA-----------GTGAAAA 134
|||| ||.|.||..|| .|||| .|.|||.
BPUM_0923 45 --------CTCC---CCTACAAATGATCATCAAATTCTTTGGTATCAAAC 83
BSNT_05945___ 135 AGAAGTATTGGTGCTGCAATCATTTTTGACGCCTGCGGATGAGGGCAATC 184
|||.|.| ||.| |||.|||| |||..||...||||
BPUM_0923 84 AGACGAA--GGCG----AATTATTT-----------GGAGTAGACAAATC 116
BSNT_05945___ 185 AA--CTGTCTATGAAATCACCTGAGGA-AAACAAGTGGTTTTCGTTCCTT 231
|| || || ||.| |.|| |||.|| |..||.||..|.|||
BPUM_0923 117 AAAGCT---TA------CAGC--AAGAGAAATAA-TTCTTCTCAATACTT 154
BSNT_05945___ 232 T-TTTCCAGAGGGGAATTG--CCGGCGTA---CAT--AAAG-AAAC---- 268
| .||.|| ..||||| | || ||| |||| ||||
BPUM_0923 155 TCCTTACA----CCAATTGATC-----TATCTCATACAAAGCAAACTGAG 195
BSNT_05945___ 269 ---GGACGAGATTTGTTCA-CTTTCATTTATTCGGCAAAATAGAAAGGAC 314
|.||.|.|.|.||.|| || ||.||||| ||.|..||
BPUM_0923 196 GATGAACAAAAATGGTACAGCT---ATCTATTC---------GATAACAC 233
BSNT_05945___ 315 GTC-----CTTTACAGAAGCGGTTCGCCATTTTTGGCCG-GTGTCTTTTG 358
.|| ||.|||||.| |.|| |.||| ||||.||.|.
BPUM_0923 234 ATCACTAACTGTACAGCA------CCCC------GTCCGTGTGTATTATT 271
BSNT_05945___ 359 TGATTGTGTGGATTCATG--------AGG---------ACAGAGGC-GTG 390
|.|...|||....|||.| ||| |.|||||| |||
BPUM_0923 272 TTAAAATGTCCCATCAAGCTGAACAAAGGCAGCAAATAAAAGAGGCTGTG 321
BSNT_05945___ 391 ------ATTGTCGAGCA--------------GGAAAG----TGA---AGC 413
|...||||.|| |||.|| ||| |||
BPUM_0923 322 GTCCACAGCCTCGAACATACTCATTTCATTTGGACAGGCGCTGATACAGC 371
BSNT_05945___ 414 G--GCGG---CGAAGAAGGGC----------------------GAACTGG 436
| ||.| |.||.||..|| ||||||.
BPUM_0923 372 GATGCTGATTCAAACAAACGCTACATCAGAAAACAGTCAGTTAGAACTGC 421
BSNT_05945___ 437 AA---------TCGCTCGCAAAAGTTCTTGAAAGTGATTTCT------AC 471
.| ||.||.||.| ||..||||||.||.| ||
BPUM_0923 422 TATATGATTTGTCTCTAGCCA------TTACAAGTGACTTTTTAACAGAC 465
BSNT_05945___ 472 TTCAGTGTCCGTTTTTACGCCGGAAG---------ATTTTACGAGCCGGA 512
||||| .||||||| ||| |||| |||..|
BPUM_0923 466 -TCAGT----CTTTTTAC-----AAGGACAGCTCCATTT-----GCCAAA 500
BSNT_05945___ 513 TGAGTGTCTGC----GAAAACATTACACTCGTGAACAG--GCGTATTTCC 556
|||...|.|.| ||||...|||.| ||||||| ||.|.|.|
BPUM_0923 501 TGAACATTTACAGAAGAAATTGTTAAA----TGAACAGCAGCTTGTGT-- 544
BSNT_05945___ 557 TG-----TTTGCTGAAA---AACGGCTGCCTCAGGTGCAGAGTGTGACCT 598
|| |.|||.|..| || ||.|...||||| ||.|...||.|
BPUM_0923 545 TGGACCATATGCAGCGAGGCAA-GGTTAGGTCAGG----GATTAGCACAT 589
BSNT_05945___ 599 TTGA--GATGATCT----------TTCCTTTTCTATTATTAGAAACAGAA 636
||.| .||| ||| ||.|.||.|.||
BPUM_0923 590 TTTATCAATG-TCTGCCCTCACTGTTGCGTTACGAT-------------- 624
BSNT_05945___ 637 AAAGAAAAACTGGAAACGCTGCTCTCTGA---------AGAAGCTGAGCT 677
|||.|..|.||||||.| ||| .|||
BPUM_0923 625 ------------GAACCCATCCTCTCTCATGCCATTTCAGA-----TGCT 657
BSNT_05945___ 678 TTTATTTGGAAGTGAAGC------TGAGCTAAGGAAG--------ACCAT 713
|||| || ||.|| ||| |..|||.| |||.|
BPUM_0923 658 TTTA-----AA--GAGGCGATTCTTGA--TCGGGATGTTTACCGTACCCT 698
BSNT_05945___ 714 TAAG-CTGTTTATTGAAAACAACTCAAACGTCACAT-TAA--CAGCGAAA 759
.|.| || |.|||..||...||||.|||.| ||| ||| |||| ||
BPUM_0923 699 CATGACT-TATATGCAATGTAACTTAAATG---CATCTAAGGCAGC--AA 742
BSNT_05945___ 760 AAGCTGCATCTG--CATCGCAACAGCCTGCAATATCGGATTGATAAATTT 807
|||||..||.|| ||..|.||||||||.||||||||.||.|||||||||
BPUM_0923 743 AAGCTTTATATGTTCACAGAAACAGCCTTCAATATCGAATCGATAAATTT 792
BSNT_05945___ 808 ATTGAGCGGTCAGGGATAGATAT--CAAATCGTACA-AAGGCGCGCTTCT 854
||||||||..|||..||.||||| .|.||..|.|| || ||.|||
BPUM_0923 793 ATTGAGCGCACAGCAATTGATATACGACATTTTCCAGAA-----GCATCT 837
BSNT_05945___ 855 --TGCCTATTTTATCTGCCTGCAAAATGAAAGTTC-AGA------ATAA 894
||..|||||||| .|||||..||| .|| ||||
BPUM_0923 838 GCTGTTTATTTTAT----------GATGAATCTTCTCGACGTTTCATAA 876
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