Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01592 and BPUM_0875
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_01592___yhcW.1.24716.seq
# -bsequence dna-align/BPUM_0875___yhcW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01592___yhcW-BPUM_0875___yhcW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01592___yhcW-BPUM_0875___yhcW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01592___yhcW
# 2: BPUM_0875___yhcW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 695
# Identity: 490/695 (70.5%)
# Similarity: 490/695 (70.5%)
# Gaps: 61/695 ( 8.8%)
# Score: 1646.5
#
#
#=======================================
BSNT_01592___ 1 GTGATTAAAGCGTTAATTTTTGATTTTGACGGGCTTATTCTAGATACAGA 50
.||.|.||.|||.|.||.||||||||.|||||..|.|||.||||||||||
BPUM_0875___y 1 TTGGTAAAGGCGATTATATTTGATTTCGACGGATTAATTTTAGATACAGA 50
BSNT_01592___ 51 AACACACGAATATGAGGTTCTTCAGGAAATATTTGAAGAGCACGGCTCAG 100
||||||.||||||||||||.|.||.|||||.||||..|||||.|..||||
BPUM_0875___y 51 AACACATGAATATGAGGTTTTACAAGAAATGTTTGCGGAGCATGAATCAG 100
BSNT_01592___ 101 TGCTGCCGCTATCTGTCTGGGGAAAGGTCATCGGAACTGC-TGCGGGTTT 149
..|||||.||.|||||.|||||.||||||||.||.|| || .||.||.||
BPUM_0875___y 101 ATCTGCCTCTTTCTGTATGGGGCAAGGTCATTGGCAC-GCAGGCAGGCTT 149
BSNT_01592___ 150 CCGGCCTTTTGAATATTTAGAAGAGCAGATCGGGAAAAAGCTGAACCATG 199
...|||.|||||||||||.|||.|||||.|.|||||.|.||||.|.||||
BPUM_0875___y 150 TAAGCCATTTGAATATTTGGAAAAGCAGCTAGGGAAGACGCTGGATCATG 199
BSNT_01592___ 200 AAGA-GCTCACACAATTGAGAAGAGAGCGGTTCGC--------CAAACGC 240
||| .||||| ||.|||..|..||||.| |||| |.
BPUM_0875___y 200 -AGACACTCAC-------AGCAGATCGGCGTTCTCGTTTTCAACAAA-GA 240
BSNT_01592___ 241 ATGGAA--ACAGAAAAAGCGAGACCTGGTGTCGAAGCGTATTT-GAATGC 287
|| ||| || |||..|||.|||||||||||.|||||.||||| ||| ||
BPUM_0875___y 241 AT-GAAGGAC-GAATCAGCAAGACCTGGTGTAGAAGCTTATTTAGAA-GC 287
BSNT_01592___ 288 GGCAAAGGATTTAGGCTTAAAAATAGGCCTTGCTTCCAGCTCTGATTATA 337
.||||||||..|.||..|.||.||.|||||||||||||||||.||.||||
BPUM_0875___y 288 AGCAAAGGAGCTCGGTATCAAGATTGGCCTTGCTTCCAGCTCAGACTATA 337
BSNT_01592___ 338 AATGGGTGTCCGGCCATTTGAAGCAAATCGGCCTGTTTGATGATTTTGAA 387
||||||||||.|..||..|.|||||.||.||.||.||.||..|.||||||
BPUM_0875___y 338 AATGGGTGTCTGATCACCTAAAGCAGATTGGTCTTTTCGACTACTTTGAA 387
BSNT_01592___ 388 GTTATTCAAACGGCTGATGATGTGGAAGAGGTGAAGCCGAATCCTGAGCT 437
..|||.|..|||.|.||||||||||||||.|||||.||.|||||.|||||
BPUM_0875___y 388 TGTATCCGCACGTCAGATGATGTGGAAGAAGTGAAACCAAATCCAGAGCT 437
BSNT_01592___ 438 CTATTTATTGGCGGCAAA------GA-ACCTCGGGGTATCGCCAGCGGAA 480
.||||| ||||| || .|.|.|||||...||||...||.
BPUM_0875___y 438 TTATTT-------GCAAACCGCACGATGCTTAGGGGTCGAGCCAAAAGAT 480
BSNT_01592___ 481 TGTCTCGCGTTTGAGGATTCTGTCAATGGTTCGATTGCTGCGAAACGTGC 530
||..|.||.||||||||||||||.|||||.||..|.|||||.|||||.||
BPUM_0875___y 481 TGCGTGGCATTTGAGGATTCTGTGAATGGATCAGTAGCTGCCAAACGAGC 530
BSNT_01592___ 531 AGGAATGAAGTGTGTCATTGTCCCGAATAAAGTAACGGGCAC-CTTGATG 579
|||.|||||.|||||.||.||.||.||.|||||.|||.|||| |||.| .
BPUM_0875___y 531 AGGTATGAAATGTGTGATCGTTCCAAACAAAGTCACGAGCACGCTTCA-A 579
BSNT_01592___ 580 TTTGAAGACTATGATCACAGGCTTGAATCAATGGCGGAAATGGA---GCT 626
||||||||.||||||..|||..|.|||||.|||||.|||||.|| |||
BPUM_0875___y 580 TTTGAAGAATATGATGTCAGATTAGAATCCATGGCTGAAATCGAATTGCT 629
BSNT_01592___ 627 CGCCCTATTGCTTGATCATC-TGAA-------CTCACAAAACTAG 663
|...|||||.| ||||.| |||| .|||..||
BPUM_0875___y 630 CCAGCTATTCC---ATCAGCTTGAAAAAGAGGATCAGTAA----- 666
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