Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01264 and BPUM_0694
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_01264___yfmM.1.24716.seq
# -bsequence dna-align/BPUM_0694___yfmM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01264___yfmM-BPUM_0694___yfmM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01264___yfmM-BPUM_0694___yfmM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01264___yfmM
# 2: BPUM_0694___yfmM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1568
# Identity: 1224/1568 (78.1%)
# Similarity: 1224/1568 (78.1%)
# Gaps: 25/1568 ( 1.6%)
# Score: 4736.5
#
#
#=======================================
BSNT_01264___ 1 ATGAGTATTTTATCTGTAAAGGATTTAAGCCACGGCTTCGGGGACCGGGC 50
||| ||.||||||||.||.|||||||||||.|||||.||.|||.|.||
BPUM_0694___y 1 ATG---ATATTATCTGTTAAAGATTTAAGCCATGGCTTTGGCGACAGAGC 47
BSNT_01264___ 51 CATTTTTAATAACGTTTCCTTCCGCCTGTTAAAAGGCGAGCACGTCGGCT 100
|||||||.|..|.||.||||||||..|.||||||||||||||.||.||.|
BPUM_0694___y 48 CATTTTTCACGAAGTCTCCTTCCGTTTATTAAAAGGCGAGCATGTTGGTT 97
BSNT_01264___ 101 TGATCGGCGCAAACGGTGAAGGAAAATCAACCTTCATGAATATTATTACC 150
|.||.|||||.||||||||||||||.|||||.||.||||||||||||||.
BPUM_0694___y 98 TAATTGGCGCCAACGGTGAAGGAAAGTCAACGTTTATGAATATTATTACT 147
BSNT_01264___ 151 GGAAAGCTTGAACCTGATGAGGGAAAAGTCGAATGGTCAAAAAATGTCCG 200
||.|||||.||.||.||||..||||||||.||||||.|||||||||||||
BPUM_0694___y 148 GGCAAGCTGGAGCCAGATGCAGGAAAAGTGGAATGGGCAAAAAATGTCCG 197
BSNT_01264___ 201 TGTCGGCTATCTGGATCAGCATACCGTGCTGGAAAAAGGAAAATCTATTC 250
||||||.||.|||||||||||.||.|||||.|||||.|||..|.|.||.|
BPUM_0694___y 198 TGTCGGTTACCTGGATCAGCACACTGTGCTAGAAAAGGGACGAACGATCC 247
BSNT_01264___ 251 GCGACGTCCTGAAAGACGCGTTCCATTATCTATTTGCGATGGAAGAGGAA 300
||||.||.||..|.||.||.|||||.|||.|||||.|.|||||||..|..
BPUM_0694___y 248 GCGAAGTGCTTCAGGATGCATTCCACTATTTATTTTCCATGGAAGCAGCG 297
BSNT_01264___ 301 ATGAACGAGATTTACAACAAAATGGGTGAAGCAGATCCCGACGAGCTCGA 350
|||||.||.||||||..|||||||||||||||.|||||.||.|||||.||
BPUM_0694___y 298 ATGAATGACATTTACGGCAAAATGGGTGAAGCCGATCCTGATGAGCTGGA 347
BSNT_01264___ 351 AAAGCTGCTTGAAGAAGTCGGCGTCATTCAAGACGCGCTGACAAACAATG 400
|||||||.|.||.|||||.||||||||||||||.|||||.||||||||||
BPUM_0694___y 348 AAAGCTGTTAGAGGAAGTGGGCGTCATTCAAGATGCGCTCACAAACAATG 397
BSNT_01264___ 401 ATTTTTATGTCATTGATTCCAAGGTGGAAGAAATCGCCCGCGGTCTCGGT 450
||||.|||.||||||||||||||||.||||||||.||..|.|||||.||.
BPUM_0694___y 398 ATTTCTATATCATTGATTCCAAGGTCGAAGAAATAGCGAGAGGTCTTGGG 447
BSNT_01264___ 451 TTGAGCGATATCGGATTAGAGCGAGATGTCACCGATTTGAGCGGCGGACA 500
||.|.||||.|.||..|.||.||.|||||.||.||..|||||||||||||
BPUM_0694___y 448 TTAACCGATCTTGGGCTGGACCGTGATGTGACAGAGCTGAGCGGCGGACA 497
BSNT_01264___ 501 GCGCACAAAGGTCCTTCTCGCTAAGCTGCTCCTTGAAAAGCCGGAAATTC 550
|||.|||||.||..|.||.||.||..||||..|.||.|||||.|||||||
BPUM_0694___y 498 GCGTACAAAAGTATTGCTTGCGAAATTGCTGTTAGAGAAGCCAGAAATTC 547
BSNT_01264___ 551 TGCTTCTCGATGAGCCGACCAACTATCTTGATGAACAGCATATTGAATGG 600
|.||||||||||||||||||||||||.|.|||||.|||||||||||.|||
BPUM_0694___y 548 TCCTTCTCGATGAGCCGACCAACTATTTAGATGAGCAGCATATTGAGTGG 597
BSNT_01264___ 601 CTGAAACGCTACCTGCAGGAATACGAGAACGCGTTCATCCTGATTTCCCA 650
|||||.|||||..|.||||||||.||.||.|||||.|||||.|||||.||
BPUM_0694___y 598 CTGAAGCGCTATTTACAGGAATATGAAAATGCGTTTATCCTCATTTCACA 647
BSNT_01264___ 651 CGATATTCCGTTCTTGAATAGTGTCATCAACCTGATTTATCACGTTGAAA 700
.|||||||||||.||.||.||.||.||.|||.||||.|||||.|||||||
BPUM_0694___y 648 TGATATTCCGTTTTTAAACAGCGTGATTAACTTGATCTATCATGTTGAAA 697
BSNT_01264___ 701 ATCAAGAGCTGACACGCTATGTCGGCGACTACCATCAGTTTATGGAAGTC 750
||||||||||.||.||||||||.||.||.||..||||.||||...||||.
BPUM_0694___y 698 ATCAAGAGCTCACGCGCTATGTTGGTGATTATGATCAATTTAAACAAGTG 747
BSNT_01264___ 751 TACGAGGTGAAGAAACAG-CAGCTTGAAGCGGCCTATAAAAAGCAGCAGC 799
|||||.||.|| |||.|| |||||||||||.||.||.||||.||||||.|
BPUM_0694___y 748 TACGAAGTCAA-AAAGAGCCAGCTTGAAGCAGCTTACAAAAGGCAGCAAC 796
BSNT_01264___ 800 AGGAAGTCGCAGAGCTGAAGGATTTCGTCGCCCGCAACAAAGCGCGCGTC 849
||||||||||.||..|.||||||||.||.||..|.|||||||||||.|||
BPUM_0694___y 797 AGGAAGTCGCTGAATTAAAGGATTTTGTGGCAAGAAACAAAGCGCGTGTC 846
BSNT_01264___ 850 AGCACGAGAAACATGGCGATGTCCCGCCAAAAGAAACTCGATAAGATGGA 899
|||||.|||||.|||||.||||||||.|||||||||||.|||||||||||
BPUM_0694___y 847 AGCACAAGAAATATGGCCATGTCCCGTCAAAAGAAACTAGATAAGATGGA 896
BSNT_01264___ 900 TATGATCGAGCTTGCGGCAGAAAAGCCAAAGCCGGAATTCCACTTTAAGC 949
||||||.||.||.||.||||||||.||||||||.||||||||||||||..
BPUM_0694___y 897 TATGATTGAACTCGCAGCAGAAAAACCAAAGCCTGAATTCCACTTTAAAG 946
BSNT_01264___ 950 CGGCGAGAACGTCAGGCAAGCTGATTTTTGAAACAAAGGATCTCGTGATC 999
||||..|.||.||.||.||..||||||||||||||||.|||.|.||.||.
BPUM_0694___y 947 CGGCACGGACTTCTGGGAAATTGATTTTTGAAACAAAAGATTTGGTCATT 996
BSNT_01264___ 1000 GGTTACGATTCCCCGCTGTCCCGTCCGCTCAACCTCCGCATGGAGCGCGG 1049
|||||.|||...||.||.||.|||||..|.||.||....|||||.||.||
BPUM_0694___y 997 GGTTATGATGAACCACTCTCTCGTCCATTGAATCTGAAAATGGAACGTGG 1046
BSNT_01264___ 1050 CCAAAAAATCGCCCTTTACGGCGCAAACGGGATCGGAAAAACGACGTTGC 1099
.||||||||.||.||||||||.||.||||||||.|||||||||||.||||
BPUM_0694___y 1047 GCAAAAAATTGCGCTTTACGGTGCTAACGGGATTGGAAAAACGACATTGC 1096
BSNT_01264___ 1100 TGAAAAGTTTGCTTGGTGAAATCCAGCCG--CTCGAAGGCTCTGTAGAAC 1147
||..||||.|.|||||.|||||....||| .||| ||....||.||||
BPUM_0694___y 1097 TGCGAAGTCTCCTTGGAGAAATTTCTCCGATTTCG--GGTGAGGTGGAAC 1144
BSNT_01264___ 1148 GCGGTGAGCACAT--CT--ATACCGGCTATTTCGAGCAAGAGGTCAAGGA 1193
||||.|| || || |||..||.||.||.||||||||.||.||.||
BPUM_0694___y 1145 GCGGAGA----ATTCCTTCATATTGGTTACTTTGAGCAAGAAGTAAAAGA 1190
BSNT_01264___ 1194 AACAAACAACAATACGTGCATCGAAGAAGTATGGAGCGAATTCCCTTCTT 1243
|..|||||.|||.||.||.||.|||||||||||||||...||||||||||
BPUM_0694___y 1191 ACAAAACAGCAACACTTGTATTGAAGAAGTATGGAGCACCTTCCCTTCTT 1240
BSNT_01264___ 1244 ATACGCAGTATGAAATCCGTGCCGCTTTGGCAAAATGCGGACTGACGACA 1293
|.|||||.||||||.|..|.||.||..|.||.|||||||||.|.||||||
BPUM_0694___y 1241 ACACGCAATATGAAGTGAGAGCTGCCCTTGCTAAATGCGGATTAACGACA 1290
BSNT_01264___ 1294 AAGCATATCGAAAGCCGCGTCGCCGTATTAAGCGGAGGCGAAAAAGCGAA 1343
||.|||||.|||||||||||..|.||.||||||||.||.||||||||.||
BPUM_0694___y 1291 AAACATATTGAAAGCCGCGTGTCTGTTTTAAGCGGTGGAGAAAAAGCAAA 1340
BSNT_01264___ 1344 AGTCAGATTGTGCAAGCTAATCAACTCAGAAACAAACCTGCTGGTGCTCG 1393
.|||.|..|.||.|||.|.|||||...||||||.|||||.||.||.||||
BPUM_0694___y 1341 GGTCCGTCTTTGTAAGTTGATCAATGAAGAAACCAACCTACTTGTTCTCG 1390
BSNT_01264___ 1394 ATGAGCCGACAAACCACTTGGATGTCGATGCCAAGGAAGAGCTCAAGCGC 1443
||||||||||.||.|||||||||||||||||.||.|||||.||.||.||.
BPUM_0694___y 1391 ATGAGCCGACCAATCACTTGGATGTCGATGCGAAAGAAGAACTAAAACGT 1440
BSNT_01264___ 1444 GCCCTGAAAGAATATAAAGGCTCCATTCTGCTCATT----TCCCACGAGC 1489
||..||||||||||.|||||...|.| ||.||| ||||||||.|
BPUM_0694___y 1441 GCATTGAAAGAATACAAAGGGAGCGT----CTTATTGATCTCCCACGAAC 1486
BSNT_01264___ 1490 CAGACTTTTATATGGATATCGCGACAGAAACGTGGAACTGCGAGTCTTGG 1539
|.||.||||||...|||.|.||.||.|||||.|||||.|||||.||||||
BPUM_0694___y 1487 CTGAATTTTATCAAGATGTAGCCACTGAAACTTGGAATTGCGAATCTTGG 1536
BSNT_01264___ 1540 ACGACGAAAGTGCTTTAA 1557
|||||.|||||..|.|||
BPUM_0694___y 1537 ACGACAAAAGTATTATAA 1554
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