Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01360 and BPUM_0661
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_01360___malA.1.24716.seq
# -bsequence dna-align/BPUM_0661___glvA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01360___malA-BPUM_0661___glvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01360___malA-BPUM_0661___glvA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01360___malA
# 2: BPUM_0661___glvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1403
# Identity: 925/1403 (65.9%)
# Similarity: 925/1403 (65.9%)
# Gaps: 127/1403 ( 9.1%)
# Score: 2807.5
#
#
#=======================================
BSNT_01360___ 1 ATGAAGAAAAAATCATTCTCAATCGTA--ATAGCGGGCGGAGGGAGCACT 48
|.|||||||.||| |.|||..|| ||.||.||.||.||.||.|||
BPUM_0661___g 1 ---ATGAAAAAAACAT--TTAATATTACCATTGCCGGAGGCGGAAGTACT 45
BSNT_01360___ 49 TTCACTCCAGGGATCGTACTCATGCTCTTGGACCATTTGGAGGAGTTTCC 98
||.||.|||||||||.|..|.|||||.||..||.||||.||.|||||.||
BPUM_0661___g 46 TTTACACCAGGGATCATTTTAATGCTGTTAAACTATTTAGAAGAGTTCCC 95
BSNT_01360___ 99 GA-TCAGAAAGC--TGAAGCTGTATGATAATGATAAGGAGAGACAGGATC 145
.| |||.| | |.||.||.||||||||||||.|.|..|||||..|..
BPUM_0661___g 96 AATTCATA---CTATAAAACTCTATGATAATGATGAAGCTAGACAAAAGA 142
BSNT_01360___ 146 GAATTGCAGGCGCCTGTGACGTTTTTATCAGAGAAAAAGCGCCGGATATG 195
.||||||.|..||.|||||..||.|..|.|.||||..|||.||.||..||
BPUM_0661___g 143 CAATTGCGGATGCATGTGAGATTATGTTAAAAGAACGAGCACCAGAAGTG 192
BSNT_01360___ 196 -GA--ATTTGCAGCGACGACTGACCCGGAAGAAGCTTTTACAGATGTCGA 242
|| |.|.||| |..||||||||.||||||||||||||..|.|||||
BPUM_0661___g 193 CGACTACTGGCA---AGTACTGACCCAGAAGAAGCTTTTACTCAAGTCGA 239
BSNT_01360___ 243 TTTTGTTATGGCGCACATCAGAGTAGGGAAATACGCGATGCGTGCGCTTG 292
||||||.|||||.||.|||.|.||.||.|||||.||.|||||||...|.|
BPUM_0661___g 240 TTTTGTAATGGCACATATCCGTGTCGGCAAATATGCCATGCGTGAATTAG 289
BSNT_01360___ 293 ATGAGCAAATTCCGTTAAAGTACGGAGTTGTCGGCCAGGAGACGTGCGGG 342
|||||.|||||||.||||||.|.|||||.||.||.|||||.||.|||||.
BPUM_0661___g 290 ATGAGAAAATTCCATTAAAGCATGGAGTAGTTGGACAGGAAACATGCGGT 339
BSNT_01360___ 343 CCGGGCGGGATCGCATACGGTATGCGTTCGATCGGCGGTGTGCTTGAAAT 392
||.||.||.||.||.|||||||||||.||.||....|||||..|.|||.|
BPUM_0661___g 340 CCAGGGGGAATAGCTTACGGTATGCGATCTATTCCAGGTGTATTAGAACT 389
BSNT_01360___ 393 ATTAGATTACATGGAAAAATACTCGCCTGATGCGTGGATGCTCAATTATT 442
..|.|||||.||||||||||||||.|||||.||.||||||.|.|||||||
BPUM_0661___g 390 TGTCGATTATATGGAAAAATACTCACCTGAAGCTTGGATGTTAAATTATT 439
BSNT_01360___ 443 CCAATCCGGCGGCAATTGTGGCTGAAGCTACGAG-ACGCCTTAA-ACCGA 490
|.||.||.||.||.||.||.||.||.|||||..| |.| |||| |||||
BPUM_0661___g 440 CTAACCCTGCAGCGATAGTAGCAGAGGCTACTCGTAAG--TTAAGACCGA 487
BSNT_01360___ 491 ATTCTAAAATTCTCAATATCTGTGATATGCCGGTTGGGATCGAAGACCGG 540
||.|.||||||.|.||.||.|||||||||||..||||.||.|||||...|
BPUM_0661___g 488 ATGCCAAAATTTTAAACATATGTGATATGCCAATTGGAATTGAAGAATTG 537
BSNT_01360___ 541 ATGGCGCA-AATTCTTGGCTTATCCTCAAGAAAAGAAATGAAGGTCCGCT 589
||.||..| |||| |.||||||||.||..|.||||||.||.|.||....|
BPUM_0661___g 538 ATTGCAAAGAATT-TAGGCTTATCTTCCCGTAAAGAACTGGAAGTAGATT 586
BSNT_01360___ 590 ATTACGGATTAAATCACTTCGGCTGGTGGACATCAATTCAGGATCAAGAG 639
|.||.||.||.|||||.||.||||||||||||...||||..|||.||.|.
BPUM_0661___g 587 ACTATGGTTTGAATCATTTTGGCTGGTGGACAGATATTCGAGATAAAAAA 636
BSNT_01360___ 640 GGCAACGATTTAATGCCGAAGCTGAAGGAGCATGTATCTCAATACGGCTA 689
||.||....||||||||..||.|.|...||||||||...||..|.||.||
BPUM_0661___g 637 GGAAATAGCTTAATGCCTGAGGTCATTCAGCATGTAAGCCAGCATGGTTA 686
BSNT_01360___ 690 TATTCCGAAAACAGAGG------CTGAAGCGGTGGA--AGC----GAGCT 727
| ..||||||.| ||||| .|.|| ||| |||||
BPUM_0661___g 687 T------GCAACAGATGGAACATCTGAA---CTAGAACAGCAAAAGAGCT 727
BSNT_01360___ 728 GGAATGACACATT------CGCCAAAGCGCGTGACGTGCAGGCCGCAGAT 771
||||...|||||| .|||||| ||..|.||.||....|||
BPUM_0661___g 728 GGAACAGCACATTAAAAAAAGCCAAA------GATATTCAAGCACTTGAT 771
BSNT_01360___ 772 CCTGATACACTGCCGAATACGTATTTGCAATATTATTTGTTCCCGGATGA 821
||..|.||..|.|||||||||||||||.||||.|||.|.||.||.|||||
BPUM_0661___g 772 CCAAAAACCGTACCGAATACGTATTTGAAATACTATCTATTTCCAGATGA 821
BSNT_01360___ 822 TATGGTGAAAAAATCAAATCCGAATCAT-------ACGCGGGCAAATGAA 864
....|||..|.|.|||||| || |||||.||.||||||
BPUM_0661___g 822 AGAAGTGGCACATTCAAAT-------ATTGCGTTCACGCGTGCCAATGAA 864
BSNT_01360___ 865 GTGATGGAAGGGCGCGAAGCTTTTATTTTCAGCCAATGT---GACATGAT 911
||||||||.|||||.|||||.|||.||||.||..||||| |.|||.||
BPUM_0661___g 865 GTGATGGAGGGGCGGGAAGCCTTTGTTTTTAGTGAATGTCAGGCCATCAT 914
BSNT_01360___ 912 T-ACACGTGAGCAGTCCACAGAAAACAGCGAAATCAAA-------ATCGA 953
| |.| |||.| ||.|.||| |.||.|||| ||.||
BPUM_0661___g 915 TGATA---GAGGA----ACTGCAAA----GGAAACAAAGCTAGCCATTGA 953
BSNT_01360___ 954 TGACCACGCATCATATATCGTTGATCTTGCCCGGGCGATTGCCTACAACA 1003
|||.|||||.||.||||||||||||.|.||..|.||.|||||.|..||.|
BPUM_0661___g 954 TGAGCACGCTTCTTATATCGTTGATTTGGCAAGAGCCATTGCTTTTAATA 1003
BSNT_01360___ 1004 CAGGTGAAAGAATGCTGTTGATCGTTGAAAATAACGGCGCAATTGCGAAC 1053
.|...|||.|.||||||.||||.||.||.||.||.|||||.||...||||
BPUM_0661___g 1004 AAAAGGAACGGATGCTGATGATTGTGGAGAACAATGGCGCCATCATGAAC 1053
BSNT_01360___ 1054 TTTGACCCGACTGCGATGGTCGAGGTGCCATGCATTGTCGGCTCAAATGG 1103
|||||.||.||.||.||||||||..|.||.||.||.||.|||...||.||
BPUM_0661___g 1054 TTTGATCCAACAGCCATGGTCGAAATTCCCTGTATCGTTGGCAGCAACGG 1103
BSNT_01360___ 1104 GCCTGAACCGATTA-CCGTCGGCACCATTCCGCAATTCCAAAAAGGGCTT 1152
.||.||| ..|||| ..||.||....|||||...|||.||||||.|.||.
BPUM_0661___g 1104 TCCAGAA-AAATTAGTGGTTGGAGATATTCCTAGATTTCAAAAAAGCCTC 1152
BSNT_01360___ 1153 ATGGAGCAGCAGGTATCCGTTGAGAAGCTGACT-GTTGAAGCGTGGGCGG 1201
|||||||||||.||...|||.|| ||..|.|.| ||.|||||.| ..|.
BPUM_0661___g 1153 ATGGAGCAGCAAGTTGGCGTAGA-AAAATTAGTAGTAGAAGCAT--TTGA 1199
BSNT_01360___ 1202 AGAA--ATCGTTCCAAAAGCTGTGGCAGGCGCTAATTTTGTCAAAAACAG 1249
|||| .||.|..|||||.||.||||||||..|.|..||.||.|||||.|
BPUM_0661___g 1200 AGAAGGGTCCTATCAAAAACTATGGCAGGCCATTACCTTATCGAAAACGG 1249
BSNT_01360___ 1250 TGCCGAACGCGCGTGTGGCAA--GACTCATTCTCGAGGATTTAATGGAGG 1297
||||||..||....||.|||| || .|||.|.||.||.|||||.|..|
BPUM_0661___g 1250 TGCCGAGTGCTAAAGTAGCAAAGGA--TATTTTAGACGACTTAATTGTAG 1297
BSNT_01360___ 1298 CCAACAAAGACTTCTGGCCTGAGCTTGATCAAAGCCCGACCCGTATATCA 1347
|.||..|||.|||.|||||.||| .||.||
BPUM_0661___g 1298 CAAATCAAGCCTTTTGGCCAGAG---------------------TTAACA 1326
BSNT_01360___ 1348 TAA 1350
|||
BPUM_0661___g 1327 TAA 1329
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