Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01152 and BPUM_0651
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_01152.1.24716.seq
# -bsequence dna-align/BPUM_0651___yefA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01152-BPUM_0651___yefA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01152-BPUM_0651___yefA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01152
# 2: BPUM_0651___yefA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1424
# Identity: 776/1424 (54.5%)
# Similarity: 776/1424 (54.5%)
# Gaps: 433/1424 (30.4%)
# Score: 2860.5
#
#
#=======================================
BSNT_01152 1 ---ATGAAAATGAAACCCCCAGTAGAAAAAAACGAATACTATGACGTGAC 47
.|||||||||||||.||.||.|||||.||.||||||||..|.||.||
BPUM_0651___y 1 TTGGTGAAAATGAAACCGCCTGTTGAAAAGAATGAATACTACAATGTAAC 50
BSNT_01152 48 ATTTGAGGATTTGACCCACGAAGGAGCGGGTGTCGCAAAGGTCCAAGGCT 97
.||.||.||.|||||.||||||||.||.|||||.||.||..|..||||.|
BPUM_0651___y 51 CTTCGAAGACTTGACGCACGAAGGTGCAGGTGTAGCGAAAATTGAAGGAT 100
BSNT_01152 98 TTCCGATCTTCGTGCCGAACGCCCTGCCGGAGGAAAAAGCCCAAATCAAA 147
|.||..||||.||.|||||.|||||.||.||.|||.|||...||||||||
BPUM_0651___y 101 TCCCTGTCTTTGTACCGAATGCCCTTCCAGACGAACAAGGGAAAATCAAA 150
BSNT_01152 148 GTGACACGCGTCAAAAAAGGGTTCGCCTTCGGCCGTCTGATTGAGCTGAA 197
||.|||||.||.||||||||.||.||.||.||.||.||.||.|||||||.
BPUM_0651___y 151 GTCACACGTGTGAAAAAAGGATTTGCTTTTGGGCGACTCATGGAGCTGAC 200
BSNT_01152 198 GGAAGAAAGCCCGCATAG--AACGGACGCCCCATGCCCGATTTACAAGCA 245
..|.|||||.|.|||||| || ||.||.|||||.||.||.||.|||||
BPUM_0651___y 201 AAAGGAAAGTCAGCATAGGCAA--GATGCGCCATGTCCTATCTATAAGCA 248
BSNT_01152 246 ATGCGGAGGCTGTCAGCTTCAGCACATGACCTACGAAGGACAGCTCCTGT 295
.||||||||||||||..||||||||||||.|||.|||||.||.||.||.|
BPUM_0651___y 249 GTGCGGAGGCTGTCAAATTCAGCACATGAGCTATGAAGGCCAACTGCTAT 298
BSNT_01152 296 TTAAACAGAAACAAGTCAAAGACGTCTTAGAACGCATCGGCAAGCTGGA- 344
||||||||||||||||.||.|||||.|||||.||.|||||||||||.||
BPUM_0651___y 299 TTAAACAGAAACAAGTAAAGGACGTTTTAGAGCGGATCGGCAAGCTTGAT 348
BSNT_01152 345 ------CCTTTCAAACGTCACCGTGCACCCGACACTCGGCATGGAAGACC 388
|.|.|.||| ||.||.||...|||||||||||||||||
BPUM_0651___y 349 ATGAGCCGTGTAAAA-------GTTCATCCTGTACTCGGCATGGAAGACC 391
BSNT_01152 389 CTTGGAACTACAGAAACAAAGCACAGGTGCCGGTAGGAGAACGCGAAGGC 438
|||||||.||..|||||||||||||.||.||.||.||.||||||||||||
BPUM_0651___y 392 CTTGGAATTATCGAAACAAAGCACAAGTTCCAGTTGGCGAACGCGAAGGC 441
BSNT_01152 439 GGACTCGTCGCCGGATTTTATCAGCAAAGAAGCCATGACATCATCGAAAT 488
|||||.||.||.||||||||||||||..|.|.||||||.|||||.||.||
BPUM_0651___y 442 GGACTTGTTGCAGGATTTTATCAGCAGCGTACCCATGAAATCATTGATAT 491
BSNT_01152 489 G-----AGCGCCTGCCTGATCCAGCAATCCAAAAACGATGAAGCCGTCCA 533
| | ||.||||||||||||||..||||||||||||.|||.||
BPUM_0651___y 492 GGAAAAA-----TGTCTGATCCAGCAATCAGAAAACGATGAAGTCGTTCA 536
BSNT_01152 534 AGCCGTCAAAGACATTTGCGCCAA--ATACGGTGTCAAAGCCTACAATGA 581
|||.||||||||.||.| ||||| .|.||||.|||||||.||.||.||
BPUM_0651___y 537 AGCTGTCAAAGAAATAT--GCCAAGCGTTCGGTATCAAAGCATATAACGA 584
BSNT_01152 582 AGAACGCCACAAAGGCTGGCTCCGCCACATCATGGTCAGATACGGCGTTG 631
||||||.||.|||||||||||.|||||..|||||||..|.||||||.|||
BPUM_0651___y 585 AGAACGTCATAAAGGCTGGCTTCGCCATGTCATGGTTCGCTACGGCATTG 634
BSNT_01152 632 TTACGGGCGAAATGATGATCGTCTTCATCACAAGAACGAACGATTTTCCG 681
..||.||.||.||||||.|.||.||..|||||||||||...||.||.|||
BPUM_0651___y 635 CAACAGGTGAGATGATGGTTGTGTTTGTCACAAGAACGGCTGAATTCCCG 684
BSNT_01152 682 CATAAAC--GAAGATCATCGAAGACATCACAGCGCAATTCCCGCAC---- 725
||.|||| .||| |.||.||..|.||.|.|||.|..|||||.|||
BPUM_0651___y 685 CAAAAACAGCAAG-TGATTGAGCAGATTATAGCACGCTTCCCACACATTC 733
BSNT_01152 726 -GTCAAATCCATCGTGCAAAACATCAACCCGAACAAAACAAACGTCATCT 774
|||| ||.|||||||||.|.||..||||.||||||||.|||||.|
BPUM_0651___y 734 GGTCA-----ATTGTGCAAAACGTAAATTCGAAGAAAACAAATGTCATTT 778
BSNT_01152 775 TCGGGAACGAAACAAACGTCATCTGGGGCGAAGAATACATCTACGACCTC 824
||||..|||||||.|..||..|.|||||.|||||||||||.||.|||...
BPUM_0651___y 779 TCGGAGACGAAACGACTGTTTTATGGGGAGAAGAATACATTTATGACACG 828
BSNT_01152 825 ATCGGAGACGTCAAATTCGCCATTTCCGCCAGATCGTTCTATCAGGTCAA 874
||.||.|||.|||||||.||.|||||.|||.|.|||||.|||||.||.||
BPUM_0651___y 829 ATTGGCGACATCAAATTTGCAATTTCAGCCCGCTCGTTTTATCAAGTGAA 878
BSNT_01152 875 CCCGGAGCAGACAAAGGTGCTCTACGACAAAGCGCTTGAGTACGCTGAGC 924
.||.|..||.||||||.||||.|||||||||||||||||.||.||.||||
BPUM_0651___y 879 TCCAGCTCAAACAAAGATGCTTTACGACAAAGCGCTTGAATATGCAGAGC 928
BSNT_01152 925 TTCAAGGGGAAGAAACCGTCATTGACGCCTACTGCGGCATCGGCACGATT 974
|.|||||.|||||||||||.||.||.||.||.|||||.||.||.||||||
BPUM_0651___y 929 TGCAAGGCGAAGAAACCGTGATCGATGCGTATTGCGGAATAGGTACGATT 978
BSNT_01152 975 TCTCTCTTCCTGGC----GAAGCAGGCGAAAAAAGTGTACGGTGTAG--- 1017
||..|.||.||.|| .|||||||| |.|||.||.||.||||
BPUM_0651___y 979 TCCTTATTTCTCGCACAAAAAGCAGGC----AGAGTTTATGGCGTAGAAA 1024
BSNT_01152 1017 -------------------------------------------------- 1017
BPUM_0651___y 1025 TTGTGCCAGAAGCAATTGAAGACGCAAAACGCAACGCTGCCTTAAACGGA 1074
BSNT_01152 1017 -------------------------------------------------- 1017
BPUM_0651___y 1075 ATCAACAACGTCGAATTCGCAGTCGGCGAAGCAGAAACCGTCATCCCAAA 1124
BSNT_01152 1017 -------------------------------------------------- 1017
BPUM_0651___y 1125 CTGGTACAAAGAAGGCATCAAAGCAGATACGCTAGTGGTCGATCCGCCAA 1174
BSNT_01152 1017 -------------------------------------------------- 1017
BPUM_0651___y 1175 GAAAAGGCTGCGACGAAGCACTATTAGACACCATTTTAAAGATGAAACCA 1224
BSNT_01152 1017 -------------------------------------------------- 1017
BPUM_0651___y 1225 AAACGCGTTGTTTATGTGTCTTGTAATCCTGGGACGCTAGCTCGTGATTT 1274
BSNT_01152 1017 -------------------------------------------------- 1017
BPUM_0651___y 1275 GCGAATTCTTGAGGATGGTGGGTATGTGACGGAGGAAGTGCAGCCGGTGG 1324
BSNT_01152 1017 -------------------------------------------------- 1017
BPUM_0651___y 1325 ATATGTTTCCGCATACGAGTCATGTGGAGTGTGTGGCGCAGTTAATTTTA 1374
BSNT_01152 1017 ------------------------ 1017
BPUM_0651___y 1375 AGAGAAAGAACAAGCTCTCAATAA 1398
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