Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01147 and BPUM_0645
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:47
# Commandline: needle
# -asequence dna-align/BSNT_01147___gatA.1.24716.seq
# -bsequence dna-align/BPUM_0645___gatA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01147___gatA-BPUM_0645___gatA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01147___gatA-BPUM_0645___gatA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01147___gatA
# 2: BPUM_0645___gatA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1484
# Identity: 1159/1484 (78.1%)
# Similarity: 1159/1484 (78.1%)
# Gaps: 52/1484 ( 3.5%)
# Score: 4477.5
#
#
#=======================================
BSNT_01147___ 1 ATGTCATTATTTGATCATAAAATCACAGAATTAAAACAGCTCATACATAA 50
||||||.|.||||||||.|||||..|.|||||||||.||||..|||||||
BPUM_0645___g 1 ATGTCACTGTTTGATCACAAAATTTCTGAATTAAAAGAGCTTTTACATAA 50
BSNT_01147___ 51 AAAAGAGATTAAGA-------TTTCTGATCTGGTTGACGAATCTTATAAA 93
|||.|| | ||||||||.|.||.|||||.|||||||||
BPUM_0645___g 51 AAAGGA-------ACTGTCTGTTTCTGATTTAGTGGACGAGTCTTATAAA 93
BSNT_01147___ 94 CGCATCCAAGCGGTTGATGATAAGGTACAAGCCTTTTTGGCATTAGATGA 143
||.|||.|.|..||.||.|..||.||||||||.||..|.|||.|.||.||
BPUM_0645___g 94 CGAATCAATGAAGTAGACGGGAAAGTACAAGCATTCCTTGCACTGGACGA 143
BSNT_01147___ 144 AGAAAGAGCGCGCGCATACGCGACGGAGCTTGATGAGGCGGTTG-----A 188
|||.|.|||.||.||.||.||.|.|||..|.||.|||||.|||| |
BPUM_0645___g 144 AGAGAAAGCTCGTGCGTATGCAAAGGAATTGGACGAGGCAGTTGGTGAAA 193
BSNT_01147___ 189 CGGCCGTTCTGAGCACGGTCTTCTTTTCGGTATGCCGATCGGCGTAAAAG 238
.||.| ||||..|||||..|.||.||||||||.|||||.||.||||
BPUM_0645___g 194 AGGAC-----GAGCTTGGTCTATTGTTTGGTATGCCAATCGGTGTGAAAG 238
BSNT_01147___ 239 ATAATATCGTAACAAAAGGGC-TGCGCACAACATGC-TCCAGCAAAATTC 286
||||.|||||.|| |||||.| |.||.||||| ||| ||.||.|||||.|
BPUM_0645___g 239 ATAACATCGTCAC-AAAGGACTTACGTACAAC-TGCATCAAGTAAAATCC 286
BSNT_01147___ 287 TCGAAAACTTTGATCCGATTTATGACGCTACTGTCGTTCAGCGCCTTCA- 335
|..|||||||||||||.||||||||.|||||.||.||..|.|| ||.|
BPUM_0645___g 287 TGCAAAACTTTGATCCAATTTATGATGCTACGGTTGTCAATCG--TTTAA 334
BSNT_01147___ 336 -AGACGCTGAAGCGGTCACAATCGGAAAACTGAACATGGACGAATTCGCC 384
|||.||.||||..|||||||||||.|||.|.||.|||||||||||.||.
BPUM_0645___g 335 GAGATGCGGAAGTAGTCACAATCGGTAAATTAAATATGGACGAATTTGCA 384
BSNT_01147___ 385 ATGGGGTCATCTACCGAAAACTCTGCTTAC-AAGCTGACGAAAAACCCTT 433
|||||.||.|||||.||||||||.|..||| |||| .|||||||||||||
BPUM_0645___g 385 ATGGGATCTTCTACAGAAAACTCAGGCTACAAAGC-AACGAAAAACCCTT 433
BSNT_01147___ 434 GGAACCTGGATACAGTTCCCGGCGGTTCAAGCGGCGGATCTGCGGCTGCG 483
||||..|..|.||.|||||.||.||.|||||.|||||.||.||.|||.|.
BPUM_0645___g 434 GGAATTTAAACACTGTTCCAGGTGGATCAAGTGGCGGCTCAGCAGCTTCA 483
BSNT_01147___ 484 GTTGCTGCGGGAGAAGTTCCGTTTTCTCTTGGATCTGACACAGGCGGCTC 533
|||||.||.||.|||||.||.|||||.||.|||||.||.||.|||||.||
BPUM_0645___g 484 GTTGCAGCAGGTGAAGTACCATTTTCACTCGGATCAGATACGGGCGGTTC 533
BSNT_01147___ 534 CATCCGTCAGCCGGCTTCTTTCTGCGGCGTTGTCGGATTAAAACCTACAT 583
.||.||.||||||||.||.||||||||||||||.||..|.|||||.||.|
BPUM_0645___g 534 GATTCGCCAGCCGGCATCATTCTGCGGCGTTGTAGGTCTGAAACCAACGT 583
BSNT_01147___ 584 ACGGCCGTGTATCTCGTTACGGACTGGTCGCATTTGCGTCTTCATTAGAC 633
|.||||||||||||||.||.||..|..||||||||||.|||||||||||.
BPUM_0645___g 584 ATGGCCGTGTATCTCGATATGGCTTAATCGCATTTGCTTCTTCATTAGAT 633
BSNT_01147___ 634 CAAATCGGACCGATTACACGTACGGTTGAGGATAACG----CGTTTTTAC 679
||||||||.||||||||.||||..||.|||||.|||| |||| |
BPUM_0645___g 634 CAAATCGGGCCGATTACGCGTAACGTAGAGGACAACGCATACGTT----C 679
BSNT_01147___ 680 TTCAAGCGATTTCTGGCGTAGATAAAATGGACTCCACGAGTGCAAATGTG 729
|||||||||||.||||.||||||.|||||||..|.||||||||.|||||.
BPUM_0645___g 680 TTCAAGCGATTGCTGGTGTAGATCAAATGGATGCAACGAGTGCTAATGTC 729
BSNT_01147___ 730 GACGTGCCTGATTTTCTTTCTTCATTAACTGGCGACATCAAAGGACTGAA 779
|||||.||.|||||||||||||||||||||||.|||||||||||..||||
BPUM_0645___g 730 GACGTCCCAGATTTTCTTTCTTCATTAACTGGAGACATCAAAGGCATGAA 779
BSNT_01147___ 780 AATCGCCGTTCCGAAAGAATACCTTGGTGAAGGTGTCGGCAAAGAAGCGA 829
|||.||.||.||.||||||||||||||.|||||.||.|||.|.|||||.|
BPUM_0645___g 780 AATTGCTGTGCCAAAAGAATACCTTGGAGAAGGCGTTGGCGAGGAAGCAA 829
BSNT_01147___ 830 GAGAATCTG-TCTTGGC-AGCGCTGAAAGTCCTTGAAGGTCTCGGCGCTA 877
.|||.|||| |||| | ||||.|.|||||..|.|||||.||.||.||.|
BPUM_0645___g 830 AAGAGTCTGTTCTT--CAAGCGTTAAAAGTATTAGAAGGACTTGGTGCAA 877
BSNT_01147___ 878 CATGGGAAGAAGTGTCTCTTCCGCACAGTAAATACGCGCTTGCGACATAT 927
|.|||||||||||||||||||||||...||||||||||||||||||.||.
BPUM_0645___g 878 CTTGGGAAGAAGTGTCTCTTCCGCATTCTAAATACGCGCTTGCGACTTAC 927
BSNT_01147___ 928 TACCTGCTGTCATCTTCTGAAGCGTCAGCGAACCTTGCACGCTTTGACGG 977
|||.|||||||.|||||.|||||.||.||.||||||||.||.||||||||
BPUM_0645___g 928 TACTTGCTGTCTTCTTCAGAAGCATCTGCAAACCTTGCGCGTTTTGACGG 977
BSNT_01147___ 978 CATCCGCTACGGCTACCGCACAGACAACGCGGATAACCTGATCGACCTTT 1027
|||.||.||.||||||||.|||||.||.||.||.|||||.||.|| |||
BPUM_0645___g 978 CATTCGTTATGGCTACCGTACAGATAATGCAGAAAACCTAATTGA--TTT 1025
BSNT_01147___ 1028 ACAAGCAAACACGCG--CTGAAGGTTTTGGAAATGAAGTCAAACGCCGCA 1075
|.|...|||.||.|| |||||||.||||||||.|||||.||||||||||
BPUM_0645___g 1026 ATATAAAAATACTCGTTCTGAAGGCTTTGGAAACGAAGTGAAACGCCGCA 1075
BSNT_01147___ 1076 TCATGCTTGGAACGTTTGCTTTAAGCTCAGGCTACTACGATGCGTACTAC 1125
||||||||||.||.||.|||.|.||||||||.||.||.|||||.|||||.
BPUM_0645___g 1076 TCATGCTTGGCACATTCGCTCTTAGCTCAGGATATTATGATGCATACTAT 1125
BSNT_01147___ 1126 AAAAAAGCGCAAAAAGTGCGTACGTTGATTAAGAAGGATTTTGAAGACGT 1175
|||||.|||||||||||.|||||.|||||.||.||.||.||.|||||.||
BPUM_0645___g 1126 AAAAAGGCGCAAAAAGTCCGTACATTGATCAAAAAAGACTTCGAAGATGT 1175
BSNT_01147___ 1176 ATTTGAAAAATATGATGTTATTGTTGGACCGACTACACCGACACCTGCGT 1225
.||||||||.||||||||.|||||.|||||.||.|||||.||.|||||||
BPUM_0645___g 1176 TTTTGAAAAGTATGATGTCATTGTAGGACCAACAACACCAACTCCTGCGT 1225
BSNT_01147___ 1226 TTAAAATCGGTGAAAACACGAAG-GATCCGCTCACAATGTACGCAAACGA 1274
||||.||.||||||||.|| ||| |||||.||.|||||||||||||||||
BPUM_0645___g 1226 TTAAGATTGGTGAAAAGAC-AAGCGATCCTCTAACAATGTACGCAAACGA 1274
BSNT_01147___ 1275 TATCTTAACGATTCCGGTCAACCTTGCCGGCGTACCGGGAATCAGCGTGC 1324
|||.|||||.||.||.||.||||||||.|||||.||.||||||||.||||
BPUM_0645___g 1275 TATTTTAACAATCCCTGTGAACCTTGCAGGCGTTCCAGGAATCAGTGTGC 1324
BSNT_01147___ 1325 CATGCGGATTAGCAGACGGACTTCCGCTCGGCCTGCAAATCATCGGAAAT 1374
|.||.|||||.|||.||||.||||||.|.||.|||||||||||.||.||.
BPUM_0645___g 1325 CTTGTGGATTTGCAAACGGTCTTCCGTTAGGACTGCAAATCATTGGCAAG 1374
BSNT_01147___ 1375 CACTTTGACGAAAGCACTGTATACCGCGTTGCTCATGCATTTGAACAAGC 1424
||||||||.|||.|.||.||.||||||||.|||||.||.||.||.|||||
BPUM_0645___g 1375 CACTTTGATGAAGGAACGGTTTACCGCGTGGCTCACGCTTTCGAGCAAGC 1424
BSNT_01147___ 1425 GACAGACCATCATAAAGCAAAACCTGAACTGTAA 1458
.|||||.|||||||||||||||||||||||||||
BPUM_0645___g 1425 AACAGATCATCATAAAGCAAAACCTGAACTGTAA 1458
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