Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01919 and BPUM_0628
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_01919___yjbB.1.24716.seq
# -bsequence dna-align/BPUM_0628___yfmI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01919___yjbB-BPUM_0628___yfmI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01919___yjbB-BPUM_0628___yfmI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01919___yjbB
# 2: BPUM_0628___yfmI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1591
# Identity: 703/1591 (44.2%)
# Similarity: 703/1591 (44.2%)
# Gaps: 686/1591 (43.1%)
# Score: 1202.5
#
#
#=======================================
BSNT_01919___ 1 ----ATGATAACATTTACAATTAGAGGAAAAAAACGGAGGCGAAATACGA 46
.|||||| |.| |||| ||||.||| |..|||||.||
BPUM_0628___y 1 ATGGGTGATAA---TGA-----AGAG----AAAATGGA-GATAAATATGA 37
BSNT_01919___ 47 TTCAATTTCTGCATAACAAAAATGTTTTTGCACTATTGCTGTCT------ 90
||.|.||||..|||| |||.|| |.|
BPUM_0628___y 38 --------------AAAACAAATCATTTT--ACTTTT----TATTAGGGG 67
BSNT_01919___ 91 --CAATC---------TTTT---CAATCTTTAGCAGGA-GTCCTCG---- 121
||||| |||| .|.||||| |.| |||||||
BPUM_0628___y 68 GACAATCCCTAGCTAATTTTGGGGATTCTTT----GTATGTCCTCGTTCT 113
BSNT_01919___ 122 --------TCACA-ATCGTTT--------------TAATGGTCCGGGTCT 148
|.||| |||..|| |||| |..
BPUM_0628___y 114 AACCATTCTGACATATCAATTAACAAACTCTACACTAAT--------TGC 155
BSNT_01919___ 149 ATCAA--ATGACTGACT--CTGTTTTT-----------TTGGCG------ 177
||||| .||.|||.|| |.||||.| ||||||
BPUM_0628___y 156 ATCAATGGTGGCTGTCTCACAGTTTGTTGGACAAGCACTTGGCGCAGTAC 205
BSNT_01919___ 178 ---GGCCTTATTTTATCGT---------------------TCA-TGTC-G 201
..||||..||||| || ||| |.|| .
BPUM_0628___y 206 TCATTCCTTTCTTTAT-GTATCAATTTAAGCTGAAAAGACTCATTATCTA 254
BSNT_01919___ 202 TTTGCGAGTATAGCAGCAAGCTTTTGCGTCTCTCCGG-TGCTTCGCATTC 250
|||||.|.|||..|| || |||| |.|||.||| |||||
BPUM_0628___y 255 TTTGCAAATATGTCA--AA----TTGC-TTTCTTCGGTTGCTT------- 290
BSNT_01919___ 251 TCGGTTTTAAAAAGGTGCTTGTGGGAGCGAATCTGCTGAGAGCGGTCTTT 300
|.||||.| |||
BPUM_0628___y 291 --GATTTTCA-------------------------------------TTT 301
BSNT_01919___ 301 ACAATCCTGATGGCATACAGCGTCACTCATCACGGACAGGCATTCTTTT- 349
|.|.|| |||| ||| |||| .|||||
BPUM_0628___y 302 ATATTC---------TACA-----ACT-ATCA-----------ACTTTTA 325
BSNT_01919___ 350 GGATTACGCTGCTGTTTGT-GTTTTGTTTTTCCTTCGCGGGCGCTTTTTT 398
..|||.|.||..|.|||.| .||.|.|||||| ||||.||
BPUM_0628___y 326 CTATTCCTCTCTTTTTTATCATTGTATTTTTC-----------CTTTCTT 364
BSNT_01919___ 399 TCA-----GCCGGCAAGATT-----------TGCGCTGCTGCCGATTATT 432
|.| |..||.|..||| |.||.||.|.||...|.|.
BPUM_0628___y 365 TGATAGATGGAGGAACCATTCCTGTTCGAAATTCGATGATCCCACGTCTA 414
BSNT_01919___ 433 GTTCCAAAGAAGCAATAT-GTAAAAGCGAATGGTGTGATCT---CTCTCT 478
||...|||||| |..|.| .|||||||.|||.||...|||| || |
BPUM_0628___y 415 GTAGAAAAGAA-CTTTTTACTAAAAGCTAATAGTTATATCTTAACT---T 460
BSNT_01919___ 479 CGAATCAATTATTC--TTAACAGCAGGCTGGGGCCTT---GGA------- 516
|..|.|||||..|| ||.|| ..|||||| ||| |||
BPUM_0628___y 461 CTGACCAATTGGTCCTTTTAC--TTGGCTGG---CTTTTAGGAGGGCTGT 505
BSNT_01919___ 517 -----GGCCTTCT--GACGTACGCCGTCCCTTTTGAACTC--ATTGTCGG 557
|||.|||| ||| |.|.| ||| ||| ||||.||.
BPUM_0628___y 506 TTATTGGCATTCTTGGAC---CACAG-----TTT---CTCCTATTGACGA 544
BSNT_01919___ 558 CGC---TGCTATTTGCCTGTTTGT--------TCTATCGGGAGCT-TCCA 595
|.| |.|||| .|.|||||| ||||| ||| |..|
BPUM_0628___y 545 CACTTGTTCTAT---ACAGTTTGTCGCTCATATCTAT-----GCTCTTTA 586
BSNT_01919___ 596 TCAGTG----------TGCTGCATGTAAATGAAGAAGAGGCTGTAGGAAC 635
|||.|| |||.|| |.||.||| ||.|||
BPUM_0628___y 587 TCATTGATACTGGGGCTGCCGC-------TAAACAAG-------AGCAAC 622
BSNT_01919___ 636 TG-CTGAAACAGCATCTGCCAGAAGTAT-------ATGGAAG--GATTTA 675
.| |||||.||..|.||.|.|| .||.| ||||||| .||.|
BPUM_0628___y 623 AGTCTGAATCATTAGCTACAAG-GGTCTTTTCAGGATGGAAGCTCATGT- 670
BSNT_01919___ 676 ATGATCATCC--CTATTGTAAGAGACATTA---------------CTGTA 708
||||..|.|| |||||..| |||||| ||||
BPUM_0628___y 671 ATGAAAAGCCTACTATTCGA----ACATTAACGATTTTAGAAATGCTGT- 715
BSNT_01919___ 709 ATGGACATGA----TAGAAG-CTTTGG-CGGGTTCCGTATGGTCATCTGC 752
.||||| |||||| .|.||| |.|||.||.|
BPUM_0628___y 716 ----CCATGAGTGGTAGAAGTATATGGACTGGTGCCAT------------ 749
BSNT_01919___ 753 TATTCTCCTCGCAT------------TTACTGCGGCTGTTTTGCATGAAA 790
||||||..| |.|| ||||..|.|| || ||||
BPUM_0628___y 750 TATTCTTGT-GTATGTCACAGAAGTCTTACACCAGC-------CA-GAAA 790
BSNT_01919___ 791 CAGAGGTGTGGTGGGGGATGTTTAACGCTTCCTATTTTATAGGCGCAATT 840
|| ||||||||..|..|||||||...|||||||..|||..|.|||
BPUM_0628___y 791 CA------TGGTGGGGCTTTATTAACGCAAGCTATTTTGGAGGAACCATT 834
BSNT_01919___ 841 GTCGGCAGTGTGAT-----TGCCATTCGTTTTTCTTC------------- 872
.|.|||.|..||.| |||..|||| |
BPUM_0628___y 835 CTAGGCGGCCTGCTCGTGCTGCGGTTCG--------CAAAACATGTGGAA 876
BSNT_01919___ 873 -----TTTTTTTGAGCGGAATATGGGCTATGCCATTAT-----GTTCA-- 910
|||.|||||.| .||||.| |||||
BPUM_0628___y 877 CAGCGTTTGTTTGAAC---------------ACATTTTTTACAGTTCAGT 911
BSNT_01919___ 911 GCTCGCTTGTAATGTCGGCGCTGACCCTTTTGTTT---------TCATTT 951
|.||| ||| |.|.|||.|||| ||||||| ||| |
BPUM_0628___y 912 GATCG-TTG------CTGTGCTAACCC-TTTGTTTAGGGTTGAATCA--T 951
BSNT_01919___ 952 TCTCCAGTCCCATTTTTATGCGCTCTG--GCTTGTGCTGCAATGGGGCCT 999
|||.|| |..|||.| |.|| |.|||| ||
BPUM_0628___y 952 TCTGCA--------TGGATGAG-TTTGTTGTTTGT-------------CT 979
BSNT_01919___ 1000 TTTTATCAGGTGCGTGATATTTGCCAGGAAACCAT---GCT--GCAGGAG 1044
||||||.||| ||||| ||.| ||| ||||.|
BPUM_0628___y 980 TTTTATTAGG------------GCCAG----CCTTTCAGCTTCGCAGCA- 1012
BSNT_01919___ 1045 GTT---ATTC---CC----GAGCAGAAAC-------GAATCGGAATCATG 1077
|| |||| || .|..|||.|| |||...||||
BPUM_0628___y 1013 -TTTCCATTCGTACCTATGTACAAGATACACTGAGTGAAATTGAAT---- 1057
BSNT_01919___ 1078 GCTGCAAAAAATGCGATTTTGACTCCTTGGTCAGGCGTCACC-------- 1119
|||..|||||.|.| |||| .|||.|
BPUM_0628___y 1058 --TGCCCAAAATACTA--------------TCAG--CTCAACATACACTA 1089
BSNT_01919___ 1120 ------------TAC------TCCA------TTATGGGGCTAG-----TG 1140
||| |||| ||||| || ||
BPUM_0628___y 1090 TCAACTTTTATATACGGAATGTCCATCCTTGTTATG-----AGCACCATG 1134
BSNT_01919___ 1141 GCTGATGCTGC--TGGTGCGAAAATAG-CTTTTATCGCGGCTGCTGCATT 1187
.||||| || | |||.||.|.|.|.| ||||
BPUM_0628___y 1135 ACTGAT-CT-CTTTGGGGCAAGAGTCGTCTTT------------------ 1164
BSNT_01919___ 1188 ATATATCATGACATT--TCTGATTGCACTGGCGCAGCCCCGTCTGGTTCA 1235
|.||||| ||.|| .|||.|| ||||...|.||| |||.
BPUM_0628___y 1165 -TTTATCA--ACGTTGCCCTGTTT--ACTGTGTCGGCC--------TTCC 1201
BSNT_01919___ 1236 TTACAGGCGAG---AAAATCGAGTTCAATGA---------- 1263
|..|| .|.|| |||| |||||
BPUM_0628___y 1202 TAGCA-TCTAGATTAAAA--------AATGAACATATTTAG 1233
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