Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01082 and BPUM_0542
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:42
# Commandline: needle
# -asequence dna-align/BSNT_01082___cotA.1.24716.seq
# -bsequence dna-align/BPUM_0542___cotA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01082___cotA-BPUM_0542___cotA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01082___cotA-BPUM_0542___cotA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01082___cotA
# 2: BPUM_0542___cotA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1654
# Identity: 1064/1654 (64.3%)
# Similarity: 1064/1654 (64.3%)
# Gaps: 236/1654 (14.3%)
# Score: 3175.5
#
#
#=======================================
BSNT_01082___ 1 ATGACACTTGAAAAATTTGTGGATGCTCTCCCAATCCCAGATACACTAA- 49
||||..||.|||||||||||.||.|..||.|||||.|||| ||
BPUM_0542___c 1 ATGAACCTAGAAAAATTTGTTGACGAGCTGCCAATTCCAG-------AAG 43
BSNT_01082___ 50 ------AGCCAGTACAGCAATCAAAAGA-------AAAAACATACTACGA 86
||||.|| || |||||| |.|||||||.||.||
BPUM_0542___c 44 TTGCGGAGCCCGT----CA---AAAAGAACCCAAGACAAACATATTATGA 86
BSNT_01082___ 87 AGTCACCATGGAAGA---ATGCACTC-ATCAGCTCCATCGCGATCTCCCT 132
|.||.|.|||||.|| || .|| |..|| |.|||.|.||.||.||.
BPUM_0542___c 87 AATCGCTATGGAGGAGGTAT---TTCTAAAAG-TTCATAGAGACCTGCCC 132
BSNT_01082___ 133 CCAACCCGCCTGTGGGGATACAACGGCTTATTTCCGGGGCCGACCATTGA 182
||||||...||.|||...||.||.|||...||.||.||.||.||||||.|
BPUM_0542___c 133 CCAACCAAACTATGGACCTATAATGGCAGTTTGCCTGGTCCAACCATTCA 182
BSNT_01082___ 183 GGTTAAAAGAAATGAAAACGTATATGTAAAATGGATGAATAACCTTC--C 230
.|..||..||||||||||.||..|.||.|||||||||||.||..|.| |
BPUM_0542___c 183 TGCAAATCGAAATGAAAAAGTTAAAGTGAAATGGATGAACAAATTGCCAC 232
BSNT_01082___ 231 TTCCACACATTTCCTTCCGATTGATCACACCATTCATCACAGTGACAGCC 280
|| |.||||||.||.|||.|.||||||||.||||| .||..|||
BPUM_0542___c 233 TT--AAACATTTTCTACCGGTCGATCACACGATTCA------CGAAGGCC 274
BSNT_01082___ 281 AGCATGAAGAGCCCGAGGTAAAGACTGTTGTTCATTTACACGGCGGCGTC 330
|.|||||.||.||.||.||.|||||.||.|||||||||||.|||||||||
BPUM_0542___c 275 ATCATGATGAACCAGAAGTCAAGACCGTCGTTCATTTACATGGCGGCGTC 324
BSNT_01082___ 331 ACGCCAG-ATGACAGTGACGGGTATCCGGAGGCTTGGTTTTCCAAAGACT 379
||.|||| |.| |||||||||.|||||.||||||||||||||...|||||
BPUM_0542___c 325 ACACCAGCAAG-CAGTGACGGCTATCCAGAGGCTTGGTTTTCACGAGACT 373
BSNT_01082___ 380 TTGAA-CAAACAGGACCTTATTTCAAAAGAGAGGTTTATCATTATCCAAA 428
||||| |||.|.|..||||.||| .||.|.||.||.||..|.||.|||||
BPUM_0542___c 374 TTGAAGCAACCGGCCCCTTCTTT-GAACGGGAAGTGTACGAATACCCAAA 422
BSNT_01082___ 429 CCAGCAGC--GCGGGGCT--ATATTGTGGTATCACGATCACGCCATGGCG 474
.||.|||| || || |.||||||||||||||||||.||.|||||.
BPUM_0542___c 423 TCATCAGCAAGC----CTGCACATTGTGGTATCACGATCATGCGATGGCA 468
BSNT_01082___ 475 CTCACCAGGCTAAATGTCTATGCCGGACTTGTCGGTGCTTATATCAT-TC 523
.|.||..|..|||||||.||.||||||.|.|..||...||||.|.|| ||
BPUM_0542___c 469 TTGACACGATTAAATGTGTACGCCGGATTAGCTGGATTTTATTTGATCTC 518
BSNT_01082___ 524 A--------TGACCCAAAGGAAAAACGCTTAAAACTGCCTTCAGACGAAT 565
| ||| ||||.|.| ||.||.|.||....||.||.|
BPUM_0542___c 519 AGATGCGTTTGA--------AAAATCAC-TAGAATTACCGAAGGATGAGT 559
BSNT_01082___ 566 ACGATGTGCCGCTTCTTATCACAGACCGCACG-ATCAATGAGGACGGTTC 614
|.|||.|.|||||..|.||||..|||||.||| .|||| |||||.||..|
BPUM_0542___c 560 ATGATATTCCGCTAATGATCATGGACCGTACGTTTCAA-GAGGATGGCGC 608
BSNT_01082___ 615 TTTGTTTTATCCAAGCGCACCGGAAAACCCTTC-----TCCGTCA-CTGC 658
..||||||||||||||..|||..|.|||.|..| .|.||.| ||.|
BPUM_0542___c 609 GCTGTTTTATCCAAGCAGACCAAACAACACGCCAGAAGACAGTGATCTAC 658
BSNT_01082___ 659 CTAATCCTTCAATCGTTCCGGCT--TTTTGCGGAGAAACCATACTCGTCA 706
|..||||.||.|||||.|| || |||||||||||||||||..|.||||
BPUM_0542___c 659 CAGATCCGTCTATCGTGCC--CTTCTTTTGCGGAGAAACCATTTTGGTCA 706
BSNT_01082___ 707 ACGGGAAGGTATGGCCATACTTGGAAGTCGAGCCAAGGAAATACCGATTC 756
|.||.||.|||||||||||.||.|||||.||.|||.|.||||||||.||.
BPUM_0542___c 707 ATGGAAAAGTATGGCCATATTTAGAAGTAGAACCACGAAAATACCGTTTT 756
BSNT_01082___ 757 CGTGTCATCAACGCCTCCAATACAAGAACCTATAACCTGTCA-CTCGATA 805
|||.|..|.||.||.||.|||||||||||.||..|.||| || ||.||.|
BPUM_0542___c 757 CGTATTTTAAATGCGTCTAATACAAGAACTTACGAGCTG-CATCTAGACA 805
BSNT_01082___ 806 ATG--GCGGAGAGTTTATTCAGATTGGTTCAGATGGAGGGCTCCTGCCGC 853
|.| |||..|| ||.|.||.|||||.||.|||||.||..|..|.||..
BPUM_0542___c 806 ACGATGCGACGA--TTTTGCAAATTGGATCTGATGGCGGCTTTTTACCAA 853
BSNT_01082___ 854 GATCTGTTAAAC-TGAATTCTTTCAGCCTTGCGCCTGCTGAACGTTATGA 902
||.|||||.|.| |.|||.|||| |.|.||||.|||||||||||.|.|||
BPUM_0542___c 854 GACCTGTTCACCATCAATCCTTT-ACCATTGCTCCTGCTGAACGATTTGA 902
BSNT_01082___ 903 TATCATCATTGACTTCACAGCATATGAAGGAGAATCGATCATTTTGGCAA 952
|.|.||||||||.||..||||.||.|||....||.||||||...|...||
BPUM_0542___c 903 TGTGATCATTGATTTTTCAGCTTACGAAAACAAAACGATCACCCTTAAAA 952
BSNT_01082___ 953 ACAGCGCGGGCTGCGG-CGGTGACGTCAATCCTGAAACAGATGCGAATAT 1001
|.|..||.|||||||| |.| ||.||.|||||||||||||||||.||.||
BPUM_0542___c 953 ATAAAGCTGGCTGCGGACAG-GAAGTAAATCCTGAAACAGATGCCAACAT 1001
BSNT_01082___ 1002 CATGCAATTCAGAGTCACAAAACCATTGGCACAAAAAGACGAAAGCA--G 1049
|||||||||.|.|||||||...| |||.||||| .||.|||| .
BPUM_0542___c 1002 CATGCAATTTAAAGTCACACGTC------CACTAAAAG-GGAGAGCACCT 1044
BSNT_01082___ 1050 AAAGCCGAAGTACCTCGCC-----TCATACC-CTTCGGTACAGCA----- 1088
|||.| |.||| .||| |||.||| |||| ||.||
BPUM_0542___c 1045 AAAAC---ATTAC--GGCCTATATTCAAACCGCTTC----CACCACTTCG 1085
BSNT_01082___ 1089 ------------TGA--AAGAATACAAAACATCAGAACGTTAAAACTGGC 1124
||| |||| ..|.|||.|.|..||..|
BPUM_0542___c 1086 ACCTAGTCGCGCTGATCAAGA-----------GCGTACGCTCACTCTTAC 1124
BSNT_01082___ 1125 AGGCACCCAGGACGAATACGGCAGACCCGTCCTTCTGCTTAATAACAAAC 1174
.||.||.|||||..|||||||..|.||..|..|..|||||.|||||.|..
BPUM_0542___c 1125 TGGTACACAGGATAAATACGGTCGCCCTATTTTATTGCTTGATAACCATT 1174
BSNT_01082___ 1175 GCTGGCACGATCCCGTCACAGAAGCACCAAAAGTCGGCACAACT------ 1218
..|||.|.||.||.|||||.||| ||...|||| ||
BPUM_0542___c 1175 TTTGGAATGACCCTGTCACGGAA-----AATCCTCGG-----CTTGGCAG 1214
BSNT_01082___ 1219 ----GAAATATGGTCCATTATCAACCCGACACGCGGAACACATCCGATCC 1264
||..|.||||||||..||||.||.|||.|.||.||||||||.||.|
BPUM_0542___c 1215 TGTAGAGGTTTGGTCCATCGTCAATCCAACAAGGGGCACACATCCCATTC 1264
BSNT_01082___ 1265 ACCTGCATCTAGTCTC-CTTCCGTGTATTAGACCGGCGGCCGTTTGATA- 1312
|..|.|||||.|| || .||..|.||..|||||.|..|.||.|||||||
BPUM_0542___c 1265 ATTTACATCTTGT-TCAATTTAGGGTGATAGACAGAAGACCATTTGATAC 1313
BSNT_01082___ 1313 -----TCGCCCGTTATCAA--GAAAGCGGGGA-ATTGTCCTATACCGGTC 1354
|| |||||| ||.| ||||| ||||| .|||||.||.|
BPUM_0542___c 1314 AGAGGTC------TATCAATCGACA--GGGGACATTGT-GTATACAGGAC 1354
BSNT_01082___ 1355 CGGCTGTCCCGCCGCCGC-------CAAGTGAAAAGGGCTGGAAAGACAC 1397
|| ..||..|||.| || ||||.|.||||..||.|||||
BPUM_0542___c 1355 CG-----AACGAAGCCCCTCCTTTACA--TGAACAAGGCTACAAGGACAC 1397
BSNT_01082___ 1398 CATTCAAGCGCATGCAGGTGAAGTCCTGAGAA-------TCGCGGCGACA 1440
|||||||||||||||.|||||||||.|..||| ||||
BPUM_0542___c 1398 CATTCAAGCGCATGCCGGTGAAGTCATTCGAATCATTGCTCGC------- 1440
BSNT_01082___ 1441 TTCGGTCCGTACAGCGGACGATACGTATGGCATTGCCATATTCTAGAGCA 1490
||.|.|||.||||||||..|.|||||.||||||||.|||||..|||||||
BPUM_0542___c 1441 TTTGTTCCATACAGCGGCAGGTACGTGTGGCATTGTCATATATTAGAGCA 1490
BSNT_01082___ 1491 TGAAGACTATGACATGATGAGACCGATGGATATAA--CAGATCCCCATAA 1538
.||.||.||||||||||||||.|||||||||||.| .||
BPUM_0542___c 1491 CGAGGATTATGACATGATGAGGCCGATGGATATTATTTAG---------- 1530
BSNT_01082___ 1539 ATAA 1542
BPUM_0542___c 1530 ---- 1530
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