Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03884 and BPUM_0483
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_03884.1.24716.seq
# -bsequence dna-align/BPUM_0483.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03884-BPUM_0483.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03884-BPUM_0483.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03884
# 2: BPUM_0483
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 673
# Identity: 225/673 (33.4%)
# Similarity: 225/673 (33.4%)
# Gaps: 374/673 (55.6%)
# Score: 449.5
#
#
#=======================================
BSNT_03884 1 ATGTATCAATGTTTCTTTATC-GACAAGCAAGGGCAGATGAA-TGAAGCA 48
|||.|||.|| || |||..||.||.|..||.||| || .||
BPUM_0483 1 --------ATGGTTCATT-TCAGACTTGCTAGAGAGGACGAACTG--CCA 39
BSNT_03884 49 -AAGTGGCAAAGCTCTTTTATG--GATTTACTCGTAAAACGCGAAAAAAA 95
||||||| ||.|||.||| | ||| |||| ..||
BPUM_0483 40 CAAGTGGC--AGATCTGTTA-GAAGAT----TCGT----TTCG------- 71
BSNT_03884 96 AGATCATTCATTTATT---------TTTGAAATG----CATAAAG---TA 129
||||.||||||||.|| |.|||||.| ||.||.| ||
BPUM_0483 72 AGATTATTCATTTTTTGATTTATTATGTGAAAAGGTATCAAAACGCTCTA 121
BSNT_03884 130 CT--------------------------GACAAGAGCATATTTTAAAAAG 153
|| .||||..|.||||||..|..|.
BPUM_0483 122 CTTTCGCTCGCGAGCTGCATTTGGTCAACACAAAGGTATATTTCCAGCAT 171
BSNT_03884 154 CATTTCTTTTTTGTTGACATTCAGAATGGTGAAATGGTTGT-TGCCGCTC 202
||..|||.|||.||.|...||.||||.|||.|.||.| ||| ||||||.|
BPUM_0483 172 CAAATCTGTTTAGTCGGAGTTGAGAACGGTCATATTG-TGTCTGCCGCCC 220
BSNT_03884 203 TATTAAAACATCGTGATAAACCCGACATTAACTTG-----------ATCG 241
|.|||||.||| ||| |.||..|.|| ||.|
BPUM_0483 221 TGTTAAAGCAT----------CCG-CGTTTTCCTGAGCCAGGTCTCATGG 259
BSNT_03884 242 ATTATATAGCAG-CAGGGGGGATAA-----CATTAATCAAAATGGGGGGA 285
|||||.| |..| ||||.|||.||| |.|| || |.|||.||.|
BPUM_0483 260 ATTATGT-GTTGTCAGGCGGGTTAAAGCTCCTTT--TC--ACTGGCGGTA 304
BSNT_03884 286 TTTTCAG-TATTGAACATGT-TGGCG---GTGACTAATGAGACTGAAAAA 330
|.||.| .|||.|.||||| |..|| ||.| ||.||..||.|||||
BPUM_0483 305 -TATCGGCCATTCAGCATGTGTTTCGTATGTTA--AAAGAAGCTAAAAAA 351
BSNT_03884 331 ------TCTTCC--AAA-------------TCCTTATAA----------- 348
|||||| ||| |..|||.||
BPUM_0483 352 GCGTGTTCTTCCTTAAACAAGCCTTTTTGGTATTTAGAAGCACTTGCCGT 401
BSNT_03884 348 -------------------------------------------------- 348
BPUM_0483 402 CGCAAAAAATCAACAAGGAAAAAAACTTGGAAGCCGGATGTTAAAGCAAT 451
BSNT_03884 348 -------------------------------------------------- 348
BPUM_0483 452 GTCTTTTTCCCTTTATTGCCCGGCAAGGCGGAGGCCTGTTCACGCTGATT 501
BSNT_03884 348 -------------------------------------------------- 348
BPUM_0483 502 ACACACAATGAAGCGAACCGTCATTTCTATCGAAAAAATGGATGGGTAGA 551
BSNT_03884 348 -------------------------------------------------- 348
BPUM_0483 552 GTTTGATGAAAGGGTATTACGCGGAAAAGAAATGTCCTTACAAAGCTGGA 601
BSNT_03884 348 ----------------------- 348
BPUM_0483 602 GTTATAAAACCGTGATTCAATAA 624
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