Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00739 and BPUM_0396
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:30
# Commandline: needle
# -asequence dna-align/BSNT_00739___ydzA.1.24716.seq
# -bsequence dna-align/BPUM_0396___ydzA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00739___ydzA-BPUM_0396___ydzA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00739___ydzA-BPUM_0396___ydzA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00739___ydzA
# 2: BPUM_0396___ydzA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 324
# Identity: 196/324 (60.5%)
# Similarity: 196/324 (60.5%)
# Gaps: 60/324 (18.5%)
# Score: 545.0
#
#
#=======================================
BSNT_00739___ 1 ATGC-TGCAA-----ACGCCGATCGGAAGACTTCGCAC-GATGGGTTTTA 43
|||| |.||| | ||| |.||||| || |..||||||||
BPUM_0396___y 1 ATGCATACAAGTATTA-GCC--------GTCTTCG-ACAGGCGGGTTTTA 40
BSNT_00739___ 44 TTGAAGGAATGTCACTCTTAATCCTGTTGTTCATCGCTATGCCGCTTAAA 93
||||.||.|||||.||.||||.|||..|.||.||.||.|||||.||.|||
BPUM_0396___y 41 TTGAGGGTATGTCTCTTTTAACCCTTCTTTTAATTGCCATGCCTCTGAAA 90
BSNT_00739___ 94 TATTGGGCAGGCCTTCCGCTTGCGGTGACAATTGTCGGTTCGGTTCACGG 143
||||..||.|...|||||.|.||.||.||.|||||.||.||..||||.||
BPUM_0396___y 91 TATTTTGCGGATATTCCGATGGCAGTCACCATTGTAGGCTCTCTTCATGG 140
BSNT_00739___ 144 CGGGTTGTTCATTTTGTATTTACTTGTCTTGGCTTATGCAACCTTCTCTG 193
||..|||||..|..|.|||.|.|||.|.|||||.||||..||||
BPUM_0396___y 141 CGCATTGTTTGTCATCTATATGCTTATTTTGGCATATGTGACCT------ 184
BSNT_00739___ 194 TCAAA------TGGCCGCTGAAATGGTCAGCT-GCCGGCTTCGTCGCCGC 236
|.||| ||||...|||||||||| |.| ||.||.||..|.||.||
BPUM_0396___y 185 TTAAAGTTCGCTGGCATTTGAAATGGTC-GATCGCTGGTTTTTTTGCGGC 233
BSNT_00739___ 237 TTTCGTCCCATTCGGAAATTTTTTGTACGACCGCGGAT--TAAGG----- 279
||||.|.||.|||||.||.|| |||..|| |||||
BPUM_0396___y 234 TTTCATTCCTTTCGGCAACTT----------CGCCTATGATAAGGTGCTT 273
BSNT_00739___ 280 --------AAATATAAA----TAA 291
..|||.||| |||
BPUM_0396___y 274 CGCCAGTATGATACAAAAGCTTAA 297
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