Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00710 and BPUM_0379
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:29
# Commandline: needle
# -asequence dna-align/BSNT_00710___ycsF.1.24716.seq
# -bsequence dna-align/BPUM_0379___ycsF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00710___ycsF-BPUM_0379___ycsF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00710___ycsF-BPUM_0379___ycsF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00710___ycsF
# 2: BPUM_0379___ycsF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity: 558/814 (68.6%)
# Similarity: 558/814 (68.6%)
# Gaps: 95/814 (11.7%)
# Score: 1785.0
#
#
#=======================================
BSNT_00710___ 1 GTGTTTCAGATTGATTTAAACTGTGATTTAGGAGAAAGCTTCGGATC--- 47
.|||.|||..|.|||.|.|||||||||||.|||||||||||.|| ||
BPUM_0379___y 1 ATGTATCAAGTAGATATCAACTGTGATTTGGGAGAAAGCTTTGG-TCAAT 49
BSNT_00710___ 48 CTACAAGATAGGTCT----TGACCAAGATATTTTAGAGTATGTGACATCA 93
.|||| ||.||| | |||.||| ||||||||.|||||.||.|||
BPUM_0379___y 50 ATACA--ATCGGT-TCAGATGAACAA---ATTTTAGAATATGTCACCTCA 93
BSNT_00710___ 94 GCGAATATCGCATGCGGATTTCATGCAGGAGATCCTAGTGTTATGCGAAA 143
||.||.|||||.|||||.|||||||||||||||||.|..||.|||.||||
BPUM_0379___y 94 GCCAACATCGCTTGCGGTTTTCATGCAGGAGATCCAACGGTGATGAGAAA 143
BSNT_00710___ 144 AACCGTCGCGCTTGCAGCGGAAAAAGGCGTAAAAATCGGTGCGCATCCGG 193
|||||||....|.|||...||||||||.|||.||||.|||||||||||||
BPUM_0379___y 144 AACCGTCAGAATGGCACTAGAAAAAGGGGTACAAATTGGTGCGCATCCGG 193
BSNT_00710___ 194 GCTTGCCGGATTTACTCGGTTTTGGGCGCCG--CAATATGGCGATTTCTC 241
|..|||..||||||.||||.|||||..|.|| ||||| ||||||||..
BPUM_0379___y 194 GTCTGCAAGATTTAGTCGGCTTTGGCAGACGTCCAATA--GCGATTTCAG 241
BSNT_00710___ 242 CTGAGGAAGCGTATGATCTTGTCGTTTATCAAATTGGCGCGCTCTCTGGC 291
|.||||||||.||||||||.|||||.||||||||||||||.||.||.|.|
BPUM_0379___y 242 CAGAGGAAGCCTATGATCTCGTCGTCTATCAAATTGGCGCTCTATCAGCC 291
BSNT_00710___ 292 TTTCTAAAAGCAGAGGGACTTCAC-ATGCAGCACGTCAAGCCGCATGGCG 340
|||||.||.|||||.|| |..||| ||||||||.||||||||.||.||.|
BPUM_0379___y 292 TTTCTCAAGGCAGAAGG-CAGCACGATGCAGCATGTCAAGCCACACGGTG 340
BSNT_00710___ 341 CTTTATACAATATGGCGGCAGTCGATCAAAA-ACTG-----TCGGATGCT 384
|..|.|||||.|||||||| |.|||| |||| ||.||..||
BPUM_0379___y 341 CACTGTACAACATGGCGGC------TAAAAATACTGAATTATCTGAATCT 384
BSNT_00710___ 385 ATCGCGAAAGCTGTCTATAAGATTGATCCAGGCCTGATTCTTTTCGGTCT 434
||.|||||.|||||.|||.|..|.||||||.|.||..|..|.|.|||.||
BPUM_0379___y 385 ATTGCGAAGGCTGTGTATCATGTCGATCCAAGTCTTGTATTATACGGGCT 434
BSNT_00710___ 435 TGCTGAGAGTGAGCTTGTAAAAGCGGGAGAACGGATCGGACTTCAGACCG 484
|.|.|..|||||.||||....|||.||.||..||||.||.|||||....|
BPUM_0379___y 435 TTCAGGCAGTGAACTTGCGTTAGCAGGTGAGAGGATGGGTCTTCAAGTGG 484
BSNT_00710___ 485 CAAATGAAGTGTTCGCCGACAGAACATACCAATCGGACGGCACGCTGACA 534
||.||||||||||..|.||..||||.||.|||.|.|||||.|||||||||
BPUM_0379___y 485 CACATGAAGTGTTTTCTGATCGAACCTATCAAACAGACGGAACGCTGACA 534
BSNT_00710___ 535 CCGCGCTCCCAGCCGGACGCACTCATTGAAAGTGATGA--TGCCGCCG-T 581
.|.|||..|.|.||..||||||||||||||...||.|| || ||.| |
BPUM_0379___y 535 TCACGCCGCGAACCAAACGCACTCATTGAAGACGACGAACTG--GCAGTT 582
BSNT_00710___ 582 CACCCAGG----TCATCAAAATGGTGAAAGAAGGGGCGGTCAAATCTCA- 626
|| .|||| ||.| |||||||..||||||..||| |||
BPUM_0379___y 583 CA-GCAGGTTGTTCGT----ATGGTGAGGGAAGGGAAGGT------TCAT 621
BSNT_00710___ 627 -----GCAAGGACATGATGTGTCATTAAAAGCAGATACAGTCTGCATTCA 671
.|||||..|.|||.|.||..|.|||||||||||.|||||.||.||
BPUM_0379___y 622 ACCGTTCAAGGGGAAGATATCTCGCTTAAAGCAGATACGGTCTGTATACA 671
BSNT_00710___ 672 TGGAGATGGAGCCCATGCGCTGACATTTGCGCAAAA--AATCAGAAAACA 719
.|||||.||....||||||||...|||||| ||||| |.| |||
BPUM_0379___y 672 CGGAGACGGCATTCATGCGCTCCAATTTGC-CAAAACCATT------ACA 714
BSNT_00710___ 720 GCTCAAAGCGGCTGGAATTGAAGTGAC-AGCTATT----TCAGAACAGAG 764
.||.|| |||.|| |||| | ||| ||| ||| ||
BPUM_0379___y 715 TCTAAA-----CTGAAA--GAAG---CAAGC-ATTCGTCTCA------AG 747
BSNT_00710___ 765 G----TCAACATAA 774
| ||| ||||
BPUM_0379___y 748 GCCTTTCA--ATAA 759
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