Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00237 and BPUM_0119

See Amino acid alignment / Visit BSNT_00237 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:11
# Commandline: needle
#    -asequence dna-align/BSNT_00237___rpsE.1.24716.seq
#    -bsequence dna-align/BPUM_0119___rpsE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00237___rpsE-BPUM_0119___rpsE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00237___rpsE-BPUM_0119___rpsE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00237___rpsE
# 2: BPUM_0119___rpsE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 507
# Identity:     467/507 (92.1%)
# Similarity:   467/507 (92.1%)
# Gaps:           6/507 ( 1.2%)
# Score: 2199.0
# 
#
#=======================================

BSNT_00237___      1 ATGATTATGCGTCGTATTGACCCAAGCAAATTAGAGTTAGAAGAACGCTT     50
                           |||.||||||||||||.|||||||||||||||||||||||||||
BPUM_0119___r      1 ------ATGAGTCGTATTGACCAAAGCAAATTAGAGTTAGAAGAACGCTT     44

BSNT_00237___     51 AGTTACGGTTAACCGCGTAGCGAAAGTTGTTAAAGGTGGTCGTCGTTTCC    100
                     |||||||||||||||||||||||||||||||||||||||.||||||||||
BPUM_0119___r     45 AGTTACGGTTAACCGCGTAGCGAAAGTTGTTAAAGGTGGACGTCGTTTCC     94

BSNT_00237___    101 GCTTCGCAGCTCTAGTCGTTGTCGGTGACAAAAACGGACACGTAGGATTC    150
                     |.||.||||||.||||.||||||||||||||||||||.||.|||||.|||
BPUM_0119___r     95 GTTTTGCAGCTTTAGTTGTTGTCGGTGACAAAAACGGTCATGTAGGTTTC    144

BSNT_00237___    151 GGTACTGGTAAAGCACAAGAAGTACCAGAAGCGATCCGCAAAGCTGTTGA    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BPUM_0119___r    145 GGTACTGGTAAAGCACAAGAAGTACCAGAAGCGATCCGCAAAGCTGTTGA    194

BSNT_00237___    201 AGATGCGAAAAAGAATTTGATTGAAGTACCAATGGTTGGAACTACAATTC    250
                     ||||||||||||||||||.|||||||||||||||||||||||||||||||
BPUM_0119___r    195 AGATGCGAAAAAGAATTTAATTGAAGTACCAATGGTTGGAACTACAATTC    244

BSNT_00237___    251 CACACGAAATCATCGGACGTTTCGGTGCAGGTAACATCTTGTTAAAACCT    300
                     ||||.|||||||||||.||.|||||||||||.|||.|..|.||.||.|||
BPUM_0119___r    245 CACATGAAATCATCGGTCGATTCGGTGCAGGAAACGTTCTATTGAAGCCT    294

BSNT_00237___    301 GCTTCTGAAGGTACTGGAGTTATCGCTGGAGGCCCTGTACGTGCGGTACT    350
                     |||||.||||||||.||||||||||||||||||||.||.||||||||.||
BPUM_0119___r    295 GCTTCAGAAGGTACAGGAGTTATCGCTGGAGGCCCAGTGCGTGCGGTTCT    344

BSNT_00237___    351 TGAGCTAGCTGGTGTAGCTGATATCCTTTCTAAGTCTTTAGGTTCTAACA    400
                     ||||||.||||||.|||||||||||||||||||.|||.||||||||||.|
BPUM_0119___r    345 TGAGCTTGCTGGTCTAGCTGATATCCTTTCTAAATCTCTAGGTTCTAATA    394

BSNT_00237___    401 CACCGATCAACATGATTCGTGCAACACTTCAAGGTTTAAGTGAACTTAAA    450
                     ||||||||||||||||.||.||||||||||||||||||||||||||||||
BPUM_0119___r    395 CACCGATCAACATGATCCGCGCAACACTTCAAGGTTTAAGTGAACTTAAA    444

BSNT_00237___    451 CGTGCTGAAGACGTTGCGAAGCTTCGTGGAAAATCTGTAGAAGAACTGTT    500
                     ||||||||||||||||||||||||||||||||||||||||||||.|||||
BPUM_0119___r    445 CGTGCTGAAGACGTTGCGAAGCTTCGTGGAAAATCTGTAGAAGACCTGTT    494

BSNT_00237___    501 AGGATAA    507
                     |||||||
BPUM_0119___r    495 AGGATAA    501


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