Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00178 and BPUM_0071
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:06
# Commandline: needle
# -asequence dna-align/BSNT_00178___clpC.1.24716.seq
# -bsequence dna-align/BPUM_0071___clpC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00178___clpC-BPUM_0071___clpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00178___clpC-BPUM_0071___clpC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00178___clpC
# 2: BPUM_0071___clpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2440
# Identity: 1980/2440 (81.1%)
# Similarity: 1980/2440 (81.1%)
# Gaps: 11/2440 ( 0.5%)
# Score: 8013.0
#
#
#=======================================
BSNT_00178___ 1 ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTACTGGCGCTAGC 50
|||||||||||||||||.||.|||.||||||||||.|||.|.||.||.||
BPUM_0071___c 1 ATGATGTTTGGAAGATTCACTGAAAGAGCTCAAAAGGTATTAGCACTTGC 50
BSNT_00178___ 51 ACAGGAAGAAGCACTTCGGTTAGGTCATAATAACATTGGCACTGAGCATA 100
|||.||||||||..||||..||||.|||||.||||||||.|||||.||.|
BPUM_0071___c 51 ACAAGAAGAAGCCATTCGCCTAGGCCATAAGAACATTGGTACTGAACACA 100
BSNT_00178___ 101 TTTTATTAGGACTGGTAAGAGAAGGAGAGGGCATTGCTGCTAAAGCTCTT 150
|||||.|.||.||.|||.|.||.||.||||||||.||.||.|||||..|.
BPUM_0071___c 101 TTTTACTTGGTCTAGTACGTGAGGGTGAGGGCATCGCCGCAAAAGCGTTA 150
BSNT_00178___ 151 CAAGCGCTTGGACTCGGTTCAGATAAAATTCAGAAAGAAGTAGAAAGTTT 200
.||||.||.||.||.|.||||||||||||.||.||||||||.|||||.||
BPUM_0071___c 151 GAAGCACTGGGCCTTGTTTCAGATAAAATCCAAAAAGAAGTCGAAAGCTT 200
BSNT_00178___ 201 GATCGGGCGCGGGCAGGAAATGTCTCAAACGAT---TCATTATACTCCTA 247
|||.||..|.|||||.||..||||||||.|.|| |||||||||.||||
BPUM_0071___c 201 GATTGGAAGAGGGCAAGAGGTGTCTCAAGCTATTCCTCATTATACGCCTA 250
BSNT_00178___ 248 GAGCTAAAAAAGTCATTGAGCTTTCAATGGATGAGGCAAGAAAACTCGGT 297
||||.||.||.||||.||||||||||||||||||.||||||||.||||||
BPUM_0071___c 251 GAGCGAAGAAGGTCACTGAGCTTTCAATGGATGAAGCAAGAAAGCTCGGT 300
BSNT_00178___ 298 CATTCTTATGTTGGAACAGAACATATTCTTCTT-GGTCTGATTCGTGAAG 346
|||||.|||||.||.||||||||||||| |||| |||||.|||||.||.|
BPUM_0071___c 301 CATTCCTATGTAGGGACAGAACATATTC-TCTTAGGTCTTATTCGCGAGG 349
BSNT_00178___ 347 GAGAAGGTGTTGCTGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTAAAT 396
||||.|||||.||.||..|.|||.|.|||||.||||||||.|||||||||
BPUM_0071___c 350 GAGAGGGTGTAGCAGCCCGCGTTTTAAATAACCTCGGTGTGAGCTTAAAT 399
BSNT_00178___ 397 AAAGCAAGACAGCAGGTGCTCCAGCTTCTAGGAAGTAATGAAACAGGATC 446
||||||.|.|||||.||.||.|||||.||.||.||||||||||||||..|
BPUM_0071___c 400 AAAGCACGTCAGCAAGTCCTGCAGCTGCTTGGCAGTAATGAAACAGGTGC 449
BSNT_00178___ 447 ATCAGCGGCAGGAACAAACAGCAATGCGAATACGCCTACTCTTGACAGCT 496
|||.||.||.||..|.|||||||||||.|||||.||.||..|.||.||||
BPUM_0071___c 450 ATCTGCCGCTGGCTCTAACAGCAATGCAAATACCCCAACATTAGATAGCT 499
BSNT_00178___ 497 TGGCAAGAGACTTAACTGCTATTGCGAAGGAAGACAGCCTTGACCCTGTA 546
|.||||||||.|||||.||.||||||||.|||||||||.|.||||||||.
BPUM_0071___c 500 TAGCAAGAGATTTAACAGCGATTGCGAAAGAAGACAGCTTGGACCCTGTC 549
BSNT_00178___ 547 ATCGGCAGAAGCAAGGAGATCCAGCGTGTCATTGAAGTGTTAAGCCGCAG 596
||.||..|||||||.||.||.||||||||||||||.||..|||||.|.||
BPUM_0071___c 550 ATTGGACGAAGCAAAGAAATTCAGCGTGTCATTGAGGTCCTAAGCAGAAG 599
BSNT_00178___ 597 AACGAAAAACAACCCTGTTCTCATTGGGGAACCAGGTGTAGGTAAAACGG 646
|||.|||||||||||.||.||.|||||.||.||.|||||.||||||||.|
BPUM_0071___c 600 AACAAAAAACAACCCGGTGCTGATTGGTGAGCCTGGTGTTGGTAAAACAG 649
BSNT_00178___ 647 CTATCGCAGAAGGTTTGGCACAGCAAATTATCAATAATGAAGTACCCGAA 696
|.|||||.||||||.|.||||||||||||||..||||||||||.||.|||
BPUM_0071___c 650 CCATCGCTGAAGGTCTTGCACAGCAAATTATTCATAATGAAGTGCCTGAA 699
BSNT_00178___ 697 ATTTTGCGTGATAAACGTGTGATGACATTAGACATGGGAACAGTTGTTGC 746
|||.|.||.||||||||.||||||||..|.||.||||||||.|||||.||
BPUM_0071___c 700 ATTCTACGCGATAAACGAGTGATGACGCTTGATATGGGAACCGTTGTAGC 749
BSNT_00178___ 747 CGGCACAAAATACCGCGGAGAATTTGAGGATCGCCTGAAGAAGGTCATGG 796
.||.||||||||.||.||.||||||||||||||..||||.||.|||||||
BPUM_0071___c 750 GGGAACAAAATATCGTGGTGAATTTGAGGATCGTTTGAAAAAAGTCATGG 799
BSNT_00178___ 797 ATGAAATTCGCCAGGCAGGAAATATCATTCTATTCATCGATGAGCTCCAT 846
|.|||||||||||||||||||||||||||||.|||||.||||||||.|||
BPUM_0071___c 800 ACGAAATTCGCCAGGCAGGAAATATCATTCTCTTCATTGATGAGCTTCAT 849
BSNT_00178___ 847 ACATTAATCGGGGCAGGCGGAGCAGAAGGTGCTATTGATGCATCTAATAT 896
|||.|.||.||.||.||.||||||||.|||||.|||||.|||||||||||
BPUM_0071___c 850 ACACTGATTGGTGCTGGTGGAGCAGAGGGTGCGATTGACGCATCTAATAT 899
BSNT_00178___ 897 TTTAAAACCTTCACTT-GCTCGTGGCGAACTCCAATGTATTGGTGCAACG 945
|.|||||||.|| ||| ||.|||||.||.||.||||||||.||.||.||.
BPUM_0071___c 900 TCTAAAACCATC-CTTAGCACGTGGAGAGCTTCAATGTATCGGGGCGACA 948
BSNT_00178___ 946 ACTCTTGATGAGTACCGTAAATATATTGAAAAAGATGCAGCACTGGAACG 995
||..|.||||||||||||||||||||||||||.|||||.||.||.|||||
BPUM_0071___c 949 ACATTAGATGAGTACCGTAAATATATTGAAAAGGATGCTGCGCTTGAACG 998
BSNT_00178___ 996 CCGTTTTCAGCCGATTCAGGTTGATCAGCCATCTGTAGATGAAAGTATTC 1045
.|||||.|||||.|||||.||.|||||||||||.||.|||||.|||||||
BPUM_0071___c 999 ACGTTTCCAGCCAATTCAAGTAGATCAGCCATCAGTTGATGAGAGTATTC 1048
BSNT_00178___ 1046 AAATTTTACAAGGTCTGCGTGACAGATACGAAGCCCACCACCGCGTTTCT 1095
||||.|||..|||.||..|.||..|.||.||.||.||.|||||.||.||.
BPUM_0071___c 1049 AAATCTTAAGAGGACTTAGAGATCGTTATGAGGCACATCACCGTGTGTCC 1098
BSNT_00178___ 1096 ATCACTGATGATGCCATTGAAGCTGCGGTTAAGCTTTCTGACAGATATAT 1145
||.||.|||||.||.|||||.||.||.||.|||||.||||||.|.|||||
BPUM_0071___c 1099 ATTACAGATGAAGCGATTGAGGCGGCAGTGAAGCTGTCTGACCGTTATAT 1148
BSNT_00178___ 1146 TTCTGACCGCTTCCTTCCGGATAAAGCAATTGACTTGATCGATGAAGCAG 1195
||||||.||.||||||||.|||||.||.|||||.||.||.|||||.||||
BPUM_0071___c 1149 TTCTGATCGTTTCCTTCCAGATAAGGCGATTGATTTAATTGATGAGGCAG 1198
BSNT_00178___ 1196 GTTCAAAGGTGAGACTGCGCTCATTTACAACGCCTCCTAACTTAAAAGAG 1245
||||.||.||..|..|.||.||.||.|||||.||.||||||.|||||||.
BPUM_0071___c 1199 GTTCGAAAGTCCGCTTACGTTCTTTCACAACACCGCCTAACCTAAAAGAA 1248
BSNT_00178___ 1246 CTTGAGCAGAAGCTTGATGAGGTTCGTAAAGAGAAGGATGCGGCAGTGCA 1295
||.|||||.|||||.|||||.||.||.||.||.||.||||||||.||.||
BPUM_0071___c 1249 CTAGAGCAAAAGCTGGATGAAGTACGCAAGGAAAAAGATGCGGCTGTTCA 1298
BSNT_00178___ 1296 AAGCCAAGAGTTTGAAAAAGCTGCTTC-CTTGCGTGATACTGAACAACGC 1344
|||.||.||.|||||||||||.||||| ||| ||.|||||.||.||.||.
BPUM_0071___c 1299 AAGTCAGGAATTTGAAAAAGCAGCTTCTCTT-CGCGATACAGAGCAGCGT 1347
BSNT_00178___ 1345 CTGCGCGAGCAAGTAGAGGATACGAAGAAATCATGGAAAGAGAAGCAAGG 1394
|||||.||..|.|||||||..||.||||||||.||||||||.||||||||
BPUM_0071___c 1348 CTGCGTGAAAAGGTAGAGGTCACAAAGAAATCTTGGAAAGAAAAGCAAGG 1397
BSNT_00178___ 1395 GCAGGAAAACTCAGAGGTTACTGTGGATGATATTGCGATGGTTGTATCCA 1444
.|||||.||.||||||||..|.|||||||||||.||.||||||||.||.|
BPUM_0071___c 1398 ACAGGAGAATTCAGAGGTATCAGTGGATGATATCGCAATGGTTGTCTCTA 1447
BSNT_00178___ 1445 GCTGGACCGGTGTGCCTGTATCTAAAATCGCCCAAACTGAAACTGATAAG 1494
|||||||.||.||||||||.||.|||||.||||||||.|||||.||||||
BPUM_0071___c 1448 GCTGGACGGGAGTGCCTGTTTCAAAAATTGCCCAAACCGAAACAGATAAG 1497
BSNT_00178___ 1495 CTTCTCAATATGGAAAACATT-CTTCATTCCCGCGTCATCGGCCAGGATG 1543
|||||.|||||||||.| ||| ||.|||||.||.||.||.||.|||||||
BPUM_0071___c 1498 CTTCTAAATATGGAACA-ATTACTCCATTCTCGTGTAATTGGGCAGGATG 1546
BSNT_00178___ 1544 AAGCAGTTGTAGCTGTTGCAAAAGCCGTCAGACGTGCGAGAGCAGGATTG 1593
||||||||||.|||||.||||||||.||.|||||||||.|.||.|||.|.
BPUM_0071___c 1547 AAGCAGTTGTCGCTGTAGCAAAAGCTGTGAGACGTGCGCGTGCTGGACTA 1596
BSNT_00178___ 1594 AAAGATCCTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGG 1643
||||||||.|||||.|||||.||||||||.||.|||||||||||.|||||
BPUM_0071___c 1597 AAAGATCCAAAACGTCCAATTGGCTCATTTATCTTCTTAGGCCCAACAGG 1646
BSNT_00178___ 1644 TGTAGGTAAAACAGAGCTTGCACGAGCACTCGCTGAATCCATTTTTGGTG 1693
.||.||||||||.|||||||||.||||||||||.||.||.|||||.||||
BPUM_0071___c 1647 GGTTGGTAAAACGGAGCTTGCAAGAGCACTCGCAGAGTCTATTTTCGGTG 1696
BSNT_00178___ 1694 ATGAAGAATCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACAC 1743
||||||||.|.||||||.|.|||||||||||.|||||||||||.||||||
BPUM_0071___c 1697 ATGAAGAAGCGATGATCCGTATTGATATGTCAGAATACATGGAGAAACAC 1746
BSNT_00178___ 1744 TCAACTTCAAGACTTGTTGGTTCACCTCCGGGGTATGTGGGATATGATGA 1793
||.||.||.|||||||||||.||||||||.||.|||||.||.|||||.||
BPUM_0071___c 1747 TCTACATCTAGACTTGTTGGGTCACCTCCTGGCTATGTTGGCTATGAAGA 1796
BSNT_00178___ 1794 AGGCGGTCAATTGACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCGTGC 1843
||||||.|||.||||.||.|||||.||||||||||||||.|||||.||||
BPUM_0071___c 1797 AGGCGGACAACTGACTGAAAAAGTGAGAAGAAAACCTTATTCTGTTGTGC 1846
BSNT_00178___ 1844 TTCTTGATGAGATCGAGAAAGCGCACCCTGATGTCTTCAATATCCTTCTG 1893
||.|.||.|||||.||.||.|||||.||.|||||.|||||.|||.|.||.
BPUM_0071___c 1847 TTTTAGACGAGATTGAAAAGGCGCATCCAGATGTATTCAACATCTTACTT 1896
BSNT_00178___ 1894 CAAGTTCTTGAAGACGGACGATTGACTGATTCTAAAGGACGCACAGTCGA 1943
|||||..|.|||||.||.||..||||||||||||||||.||.||.||.||
BPUM_0071___c 1897 CAAGTATTAGAAGATGGTCGTCTGACTGATTCTAAAGGGCGTACTGTTGA 1946
BSNT_00178___ 1944 TTTCCGCAATACCATTCTGATCATGACATCAAACGTCGGAGCAAGTGAGC 1993
.||..|.|||||.|||.|||||||||||||.|||||.|||||.|||||.|
BPUM_0071___c 1947 CTTTAGAAATACGATTTTGATCATGACATCCAACGTTGGAGCTAGTGAAC 1996
BSNT_00178___ 1994 TGAAACGCAATAAATATGTCGGCTTTAACGTTCAGGATGAAACTCAAAAT 2043
||||.||.|||||||||||.|||||||||||.|||||||||..|||||||
BPUM_0071___c 1997 TGAAGCGAAATAAATATGTTGGCTTTAACGTGCAGGATGAAGGTCAAAAT 2046
BSNT_00178___ 2044 CATAAAGACATGAAAGACAAAGTGATGGGTGAATTAAAACGAGCGTTCAG 2093
.|.||.||.|||||||.||||||||||||.||.||.|||||.||||||||
BPUM_0071___c 2047 TACAAGGATATGAAAGGCAAAGTGATGGGCGAGTTGAAACGTGCGTTCAG 2096
BSNT_00178___ 2094 ACCTGAGTTCATCAACCGTATCGATGAAATCATTGTCTTCCATTCACTTG 2143
|||.||.||||||||||||||.||||||||||||||||||||||||||||
BPUM_0071___c 2097 ACCAGAATTCATCAACCGTATTGATGAAATCATTGTCTTCCATTCACTTG 2146
BSNT_00178___ 2144 AGAAAAAACATCTTACTGAAATTGTGTCATTAATGTCTGATCAATTAACG 2193
|.||.||||||||.|..||.||||||||..|.||||||||||||||.|||
BPUM_0071___c 2147 AAAAGAAACATCTAAAAGAGATTGTGTCTCTCATGTCTGATCAATTGACG 2196
BSNT_00178___ 2194 AAACGCTTGAAAGAACAAGATCTTTCTATCGAATTGACAGATGCTGCAAA 2243
|||||.||.|||||||||||.|||||.||.|||||||||||.||.|||||
BPUM_0071___c 2197 AAACGATTAAAAGAACAAGACCTTTCAATTGAATTGACAGAAGCAGCAAA 2246
BSNT_00178___ 2244 AGCGAAAGTCGCGGAAGAGGGCGTTGACCTGGAATACGGTGCCCGTCCGT 2293
||||||..|.||.||.||.||.||.|||||.||.||||||||.|||||||
BPUM_0071___c 2247 AGCGAAGATTGCTGATGAAGGTGTAGACCTTGAGTACGGTGCGCGTCCGT 2296
BSNT_00178___ 2294 TAAGAAGAGCGATCCAAAAACATGTCGAGGATCGTTTATCTGAAGAACTC 2343
|||||||||||||.|||||.|||||.||||||||..|.|||||.||.||.
BPUM_0071___c 2297 TAAGAAGAGCGATTCAAAAGCATGTGGAGGATCGACTTTCTGAGGAGCTT 2346
BSNT_00178___ 2344 CTCAGAGGAAATATTCATAAAGGACAGCATATTGTTCTTGATGTAGAAGA 2393
||.|..||.||||||.|.|||||.||.||.|||||..|.|||||.|||||
BPUM_0071___c 2347 CTGAAGGGTAATATTGAAAAAGGTCAACAAATTGTATTAGATGTGGAAGA 2396
BSNT_00178___ 2394 TGGCGAATTTGTCGTAAAAACGACTGCTAAAACGAATTAA 2433
|||.|||.||||||||||||||||.|||...|||||.|||
BPUM_0071___c 2397 TGGAGAAATTGTCGTAAAAACGACGGCTGCTACGAACTAA 2436
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