Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00057 and BPUM_0009
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:59
# Commandline: needle
# -asequence dna-align/BSNT_00057___xpaC.1.24716.seq
# -bsequence dna-align/BPUM_0009___xpaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00057___xpaC-BPUM_0009___xpaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00057___xpaC-BPUM_0009___xpaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00057___xpaC
# 2: BPUM_0009___xpaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 703
# Identity: 386/703 (54.9%)
# Similarity: 386/703 (54.9%)
# Gaps: 176/703 (25.0%)
# Score: 888.5
#
#
#=======================================
BSNT_00057___ 1 ATGCAGAGAT-----TTTTTCACTTTTTGATGTGGAGTTTAA----CTAG 41
|| ||.|| ||||..|||||| ||.||| |..| ||
BPUM_0009___x 1 AT---GAAATCAATCTTTTATACTTTT--ATATGG---TCCATCCTCT-- 40
BSNT_00057___ 42 CAGTGCGACTTTTGTTTTCATTGGAATATTGAGCTTTTTTGGTTTAAACC 91
|.|||||| ||||| || ||.||.|||.||||
BPUM_0009___x 41 -----CTACTTTT-TTTTC-------------GC--TTGTGATTTTAACC 69
BSNT_00057___ 92 AGTC--------GCTTTT---------------TTTATCTATTGTTTATG 118
||| |.|.|| .|||||.||..|.||||
BPUM_0009___x 70 -GTCAGTATAGGGGTCTTCCATCATCATGCTGGATTATCGATACTGTATG 118
BSNT_00057___ 119 -----------------GGCTTGCTTCT--GGAGCAGCCGTATATATAGC 149
|..|||.||.| |||||||
BPUM_0009___x 119 CGATGATTGGGTGGGGTGTGTTGTTTGTAGGGAGCAG------------- 155
BSNT_00057___ 150 TGGCATCTGGAATG-----CAAGACGGTTATTTCTTAAA-AAGCATGAAT 193
.||||.|| ||| ||.||| ||||| ||.||.|.|.
BPUM_0009___x 156 ------ATGGACTGCTTTCCAA-----TTGTTT-TTAAAGAAACACGGAC 193
BSNT_00057___ 194 TGACAGGAAGAGAGTATGCTTACATTAAGAAAAACTTAGAGGAAGCAAGG 243
||.|..|.||.||.||||..||.||.||..|..|.|||.|.||||||.||
BPUM_0009___x 194 TGTCTCGTAGTGATTATGTATATATCAAACAGCATTTAAAAGAAGCAGGG 243
BSNT_00057___ 244 CAGAAAATGGTCCGTCTTAGGAAAA-CCTTGTTTCAGGCT---AAAAGCA 289
||.||..|.||.||| |||..|||| |.||.||| ||| ||||.|.
BPUM_0009___x 244 CAAAAGCTTGTGCGT-TTAAAAAAAGCTTTATTT---GCTGTGAAAAACG 289
BSNT_00057___ 290 TTCAAATGTTTAAGCAAAATGCAGAAATGCTAAGGATTGTGAGAAGGATT 339
|.||||.|.|.||.||.|||...|||.|..|..||.|||...||.|.||.
BPUM_0009___x 290 TACAAACGATCAAACATAATTATGAAGTTTTTCGGCTTGCACGACGAATC 339
BSNT_00057___ 340 TATCTCCTCACCAAAAAAGAGCCAAAGCGGTTTTATCAGGCAGAACGATT 389
|||....|.||.||||||||||||||.||.||||||.|.|||.|.||.||
BPUM_0009___x 340 TATACAATAACAAAAAAAGAGCCAAATCGATTTTATGATGCACAGCGCTT 389
BSNT_00057___ 390 TTTTTATCAAACTCTCGATTCGGTTGTTGAATTGACAGAGAAGTATG--C 437
||.||.|.|||.|.|.|||||.||.||||||.|.||.|||||.|||| |
BPUM_0009___x 390 TTATTTTGAAAGTTTGGATTCCGTCGTTGAACTAACTGAGAAATATGCAC 439
BSNT_00057___ 438 TTTTCTATCATCTCACCCAAAAAAAAGCAAAGAACTGTCGATGTCGTTAA 487
|.||.|||.| |||.||.||....|||.|.||.|||...|||.|.||||
BPUM_0009___x 440 TGTTGTATAA--TCAGCCTAATCGTAGCCATGAGCTGGAAATGACATTAA 487
BSNT_00057___ 488 GTGAGACACGCATCACTCTTACTGA-ATTGAC---------CAAGCGTTT 527
|..|.||.|| |.||| |||||| .||||..||
BPUM_0009___x 488 GCCAAACCCG----------AGTGACATTGACAGAGCTGCAAAAGCAATT 527
BSNT_00057___ 528 AGAGGAA-GATTT--AAC-----TCAGGCAATGGATGAT-GAA----TTT 564
||.||| ||||| ||| |.||| ||..||| || ||| ||
BPUM_0009___x 528 -GACGAATGATTTGCAACAAGTGTTAGG-AAGAGAT-ATAGAAGCTCTT- 573
BSNT_00057___ 565 GACGAGTTGCAGTTTGAATTAGACGCAGCAAAACATTCAT--TAAAGAAA 612
|...||| ||.|||||.|| ||||..||| || |.||||||
BPUM_0009___x 574 --CATATTG-AGCTTGAAGTA---GCAGATAAA-----ATGATGAAGAAA 612
BSNT_00057___ 613 TAA 615
||.
BPUM_0009___x 613 TAG 615
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