Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01095 and BL05059
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:36
# Commandline: needle
# -asequence dna-align/BSNT_01095___yebC.1.5803.seq
# -bsequence dna-align/BL05059___yebC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01095___yebC-BL05059___yebC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01095___yebC-BL05059___yebC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01095___yebC
# 2: BL05059___yebC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity: 472/938 (50.3%)
# Similarity: 472/938 (50.3%)
# Gaps: 313/938 (33.4%)
# Score: 974.0
#
#
#=======================================
BSNT_01095___ 1 ATGACGGAAGAA----AGAAAAGAAACGTTTGAAGAAGAAATTAACCAGA 46
||||..|||||| |.|||.||||| |||||.||.||
BL05059___yeb 1 ATGATTGAAGAACATCACAAACGAAAC----GAAGATGATAT-------- 38
BSNT_01095___ 47 GTGAAAGAATAGATGCAGATGAAGAACC-GCTATCGAGAATGTCCAGAAA 95
|||..||||||| ||| |||||.|||||.||.||
BL05059___yeb 39 ----------------AGAACAAGAACCTGCT-TCGAGGATGTCGAGGAA 71
BSNT_01095___ 96 GGCGAGCCGGCAAAGCAAGCAGAAGCAAAAACAA--AAACAGAAACCG-C 142
..| ||||.||| |||| |||| ||.|.||| |.|| |||.||| |
BL05059___yeb 72 TTC---CCGGAAAA--AAGC-GAAG-AAGAGCAAGGAGAC-GAATCCGTC 113
BSNT_01095___ 143 GCCAGGAACGCGGTGAA-TCAA--CTGTTAAAGACAAGCTTGCGTCTGTT 189
..|||.|| || |||| |.||.|..|| |.||.||.|
BL05059___yeb 114 TGCAGCAA-------AAGTCAAATCGGTGATGGA-------GAGTGTGAT 149
BSNT_01095___ 190 TGGGCAGCCATCAACAGATATTGCGGTTTTGCGTTCTCG--ATTTTAAAA 237
| ||.||..|...|.|.||||.|.|.||| ||.|||| ||||||||.
BL05059___yeb 150 T--GCCGCTTTGTTCCGTTATTTCAGCTTT--GTGCTCGATATTTTAAAG 195
BSNT_01095___ 238 TCACCGGCGAAAACTGTCGTAACGGATGGTTTT------TCTCATTATAA 281
||.||||.|...|||| |...||.||.| |||.|||.|||
BL05059___yeb 196 TCCCCGGTGCGCACTG------CACTTGATTATGACCGGTCTTATTTTAA 239
BSNT_01095___ 282 GTA---CGGTCTGATTTCAAT---GCTTATATTCAGTATCATTTTTTCAA 325
||| || |.|||||||| ||||.|| .|.||.| |.|||||..
BL05059___yeb 240 GTATTCCG---TTATTTCAATGACGCTTTTA-GCTGTTT--TCTTTTCGC 283
BSNT_01095___ 326 TTGGGAATTGGTTTCAGTTAAAGGCAAGCTGGAATC-GGCCG-------- 366
|.||.||.|..|.||||.| |||.| | |||||
BL05059___yeb 284 TCGGCAACTTTTATCAGCT--------GCTTG---CGGGCCGGGGGAGAA 322
BSNT_01095___ 367 --CTCGGTTTCGGAGAACGCCATC-ATGCTTTCTAT-GACGGGTTTTTAG 412
|||||.|||||.| ..|| .|||..|.||| ||.|.||||||.|
BL05059___yeb 323 TTCTCGGGTTCGGCG-----TGTCGGTGCCGTTTATGGAAGTGTTTTTGG 367
BSNT_01095___ 413 TTGTTCTTGTGTATTTGCTG----------ATATTTT---TCGCGGTAAT 449
||| |||.|||.|.||| ||.|||| |.||||.|
BL05059___yeb 368 TTG----TGTTTATCTACTGCATGGCTTTCATGTTTTGGATGGCGGCA-- 411
BSNT_01095___ 450 GGTCTTTGCTATATGGGCTGTCTCCCGCTATATG-------ATGAAGCAG 492
||.|..||||||||.||....|.|||| ||.||||
BL05059___yeb 412 -------GCGAGCTGGGCTGTATCGAATTTTATGCTCAGGTATAAAGC-- 452
BSNT_01095___ 493 AAGGTGACGTTCA------GAGA--AGCGGC----TGCCGTATTGGGTTC 530
|||| ||.| | |||| |.| ||.||
BL05059___yeb 453 ---------TTCATTTTTCGATATCA-CGGCAAAGTAC-------GGCTC 485
BSNT_01095___ 531 ATTGCTTGTACCGGTAAT------TGCTGTTTCAATCCTTTGGCTGATCT 574
.||.||.||.|||.|.|| |||.|.| ||.|||.||||.|
BL05059___yeb 486 TTTACTGGTTCCGTTTATCGTCCCTGCCGCT------CTGTGGATGATTT 529
BSNT_01095___ 575 TTGCGATCGTGAATATCCC------------AATGCT---GACAGTACTG 609
|.|||||..|.||..||.| .||.|| ||..||..|.
BL05059___yeb 530 TCGCGATTATCAACTTCACGGCCGCGACGGTGATTCTCTCGATCGTCATC 579
BSNT_01095___ 610 TTTACGGTGCTGATCTT-----GTTTTCCATCT--TT-------TTTAT- 644
||||.||...|||.||| .||||.||| | || |||||
BL05059___yeb 580 TTTATGGGATTGACCTTCGGCACTTTTACAT-TGATTCAATCAATTTATG 628
BSNT_01095___ 645 ------------CATCGCG-------CTGTATGTACAGCGTGTGTACCAG 675
.|.|||| ||| ||||||.||||||.||||
BL05059___yeb 629 AAAAAAGCGAAAAACCGCGGTTTGACCTG-ATGTACTGCGTGTTTACC-- 675
BSNT_01095___ 676 GCGGCACAAG-----ATGCACCAATTGATTATATCTATTGTGTATTTGCA 720
| .||| |||| |||| |||||.|..
BL05059___yeb 676 ---------GTCTTTTTGC-----TTGA--------ATTG-GTATTCGTT 702
BSNT_01095___ 721 GTGG----TTGCGATAGCGCTGCTGTTTACGGCAGTGACTTGGCCGTTTA 766
|.|| |||..| ||||.|| |||.|..|||||
BL05059___yeb 703 GGGGCAACTTGGAA----GCTGGTG-----GGCGGATACTTG-------- 735
BSNT_01095___ 767 TTTCTGAATATTTTACGGCGTCGCTGATTCCGCTTTAA 804
|| |.|.|||||.||.||..|.|||
BL05059___yeb 736 ---CT-----------GTCCTCGCTTATCCCTGTATAA 759
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