Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04572 and BL03955
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:43
# Commandline: needle
# -asequence dna-align/BSNT_04572___yubG.1.5803.seq
# -bsequence dna-align/BL03955.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04572___yubG-BL03955.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04572___yubG-BL03955.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04572___yubG
# 2: BL03955
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity: 912/1443 (63.2%)
# Similarity: 912/1443 (63.2%)
# Gaps: 201/1443 (13.9%)
# Score: 2699.0
#
#
#=======================================
BSNT_04572___ 1 ------------GTGACACTTC---------AAAAGGATAAAGTGATCA- 28
|| ..|||| |||||| ||| |||||
BL03955 1 ATGCCTAAATTGGT--TTCTTCAAATCTTGTAAAAGG-TAA---GATCAT 44
BSNT_04572___ 29 -AATGGGTTCGGTTTACACCGCCTCAAGTGCTTGCCATTGGTTTTTTCCT 77
||| .|||..|||||.||...|||.||..||.||||.||..|
BL03955 45 CAAT--------ATTAGTCCGCCGCAGACGCTGGCTCTTAGTTTCTTGAT 86
BSNT_04572___ 78 TACCATTATCATCGGGGC-TGTCCTATTAATGCTTCCGATT------TCC 120
||.||||...|||||||| ||| .||||.|.|||.|| | |||
BL03955 87 TATCATTGCGATCGGGGCTTGT-TTATTGAAGCTGCC---TGGCGCCTCC 132
BSNT_04572___ 121 ACTACGAAGCCAT-TGTCATGGATAGATGCTCTTTTTACTGCGGCTTCCG 169
||||| ..|| |.||||||.|.||||||.|.|||||.||..|.||.|
BL03955 133 ACTAC----TTATATCTCATGGGTGGATGCTTTATTTACGGCCACCTCGG 178
BSNT_04572___ 170 CTACAACTGTTACAGGGCTTGCTGTTGTCGATACCGGTACTCAATTTACG 219
|.||.||.||.||.||.||||.||||||.|||||.||..|..|.|||||.
BL03955 179 CAACTACGGTAACTGGCCTTGTTGTTGTAGATACAGGGGCAGATTTTACA 228
BSNT_04572___ 220 GTATTCGGGCAAACAGTTATTATGGGGCTGATTCAGATTGGCGGGCTTGG 269
||.|||||.|||||.|||||||||.|.||||||||.||.||||||||.||
BL03955 229 GTTTTCGGACAAACCGTTATTATGTGCCTGATTCAAATCGGCGGGCTCGG 278
BSNT_04572___ 270 ATTTATGACGTTTGCGGTCTTGATCGTCATGATATTAGGAAAAAAAATCG 319
.||.|||||||||||.|||.|..||||||||||..|.||.||||||||||
BL03955 279 CTTAATGACGTTTGCCGTCCTCGTCGTCATGATGATCGGCAAAAAAATCG 328
BSNT_04572___ 320 GATTAAAAGAACGAATGCTCGTCCAGGAAGCCTTAAACCAGCCGACAATC 369
|.||..|..|.||.||.||.||.||.|||||.||.||||||.|..|..|.
BL03955 329 GCTTGCAGCAGCGGATTCTTGTTCAAGAAGCATTTAACCAGACTTCTTTA 378
BSNT_04572___ 370 GGCGG---TGTCATTGGCCTTGTCAAAGTCCTATTTCTGTTTTCGATCAG 416
||||| |||| .||.|.|||||...|||.|||.|.||..|||| .|
BL03955 379 GGCGGGCTTGTC---CGCTTGGTCAAGCACCTGTTTATTTTCACGAT-TG 424
BSNT_04572___ 417 T-ATTGAATTGATAGCAGCACTCATTTTATCCATCCGGCTTGTACCTCAG 465
| ||.|||||..|.||....||.||..|.||.|||.|....||.|||.|.
BL03955 425 TCATAGAATTTGTGGCGTTTCTGATCCTTTCGATCAGATGGGTTCCTGAA 474
BSNT_04572___ 466 TACGGCTGGTCATCCGGCTTGTTTGCA-AGTTTGTTTCACGCAATATCTG 514
||.||.|.|..|...||||||||| || |||||||||.||.|.||.||.|
BL03955 475 TATGGTTTGCAAAAAGGCTTGTTT-CATAGTTTGTTTAACACGATTTCAG 523
BSNT_04572___ 515 CTTTTAACAATGCCGGGTTTTCGTTGTGGCCTGATAATTTG-----ATGA 559
|.|||||||||||.||.|||||..||||||||||.||.||| |
BL03955 524 CCTTTAACAATGCGGGATTTTCCCTGTGGCCTGACAACTTGTCTCAA--- 570
BSNT_04572___ 560 GCTACGTTGGCGATCCTACAGTAAACCTCGTGATTACTTTCTTATTTGTT 609
||.||.||||||||.|..||.|||||.||.||.||...|.|.||..||
BL03955 571 --TATGTCGGCGATCCGATTGTCAACCTTGTCATCACAGGCCTTTTCATT 618
BSNT_04572___ 610 ACAGGAGGGATCGGATTTACGGTTCTGTTTGATGTGAT-GAAAAATCGGC 658
|||||.||.|||||.|||||.||||||.|.||| |.|| ||.|||.||
BL03955 619 ACAGGGGGAATCGGCTTTACCGTTCTGCTGGAT-TTATGGACAAAGCG-- 665
BSNT_04572___ 659 GTTTTAAAGCT--------TTTTCTTTACATACAAAGCTCATGCTTACAG 700
||.|| ||.||..|.|||.|.|||||||||.|....|
BL03955 666 ------AAACTTCCGGAAATTATCGCTGCATTCCAAGCTCATGATCGTTG 709
BSNT_04572___ 701 GAACGCTGATGTTGAATGCGA--------TTGCTATGCTTACGGTCTTTA 742
||||..||||..|.|||.||| ||||| |.|.||.|
BL03955 710 GAACATTGATCATCAATACGACAGCCGCGTTGCT--------GATTTTCA 751
BSNT_04572___ 743 TTTTAGAATACAGCAACCCTGGGACGCTCGGCCACCTGCATATAGTGGAT 792
|||||||||||...||.||.||.|||||||||...||||.|.|.|..||.
BL03955 752 TTTTAGAATACTCGAATCCGGGTACGCTCGGCGGACTGCCTTTGGCCGAC 801
BSNT_04572___ 793 AAACTGT-GGGCGTCCTATTTTC-AGGCAGTGACGCCGAGAACCGCAGGC 840
|||.||| ||||| |.||.||.| |||| |||||.||||||||.||.||.
BL03955 802 AAAATGTGGGGCG-CTTACTTCCAAGGC-GTGACACCGAGAACTGCCGGA 849
BSNT_04572___ 841 TTCAATTCTCTAGATTTTG----GAAGCATGAGAGAAGGAACAA------ 880
||||||.|.||.|||.|.| ||.| ||||
BL03955 850 TTCAATACGCTTGATATCGCCCAGATG-------------ACAACGCCGT 886
BSNT_04572___ 881 ---TTGTATTTACTTTAT--TATTGATGTTTATCGGAGCAGGAAGCGCAT 925
|..|.||.| |.|| |.|||||||||||||||||.|||||.||.|
BL03955 887 CCCTCCTGTTAA--TCATCGTTTTGATGTTTATCGGAGCCGGAAGTGCGT 934
BSNT_04572___ 926 CAACGGCGAGCGGCATTAAGCTGACTACGTTCATCGTGATTTTAACATCT 975
||||||..|||||.|||||.|||||.||||..|||||||| .||||
BL03955 935 CAACGGGAAGCGGAATTAAACTGACAACGTATATCGTGAT-----GATCT 979
BSNT_04572___ 976 GTTATTGC-----TTAC----TTGAGAGGTAAAAAAGAAACGGTTATTTT 1016
|.|| |.|| ||.||.||.||||..||.||||||.|.|
BL03955 980 ----TGGCGACGATCACCTTTTTAAGGGGGAAAAGCGAGACGGTTGTGT- 1024
BSNT_04572___ 1017 CCGCCGTTCTATCAAATATCCGATTATCATTAA------------AGCTT 1054
|||||....||||||..||.|| |||||
BL03955 1025 -----------TCAAAAGGGCGATTAAGATGAAAACCATTTTAAGAGCTT 1063
BSNT_04572___ 1055 TAGCTGTGAGCGTCACCAGTTTGTTCATCGTGTTTTTAG--GGATTT--- 1099
||||..|.|..||.|.||||||.||..|||||.||||.| ..||||
BL03955 1064 TAGCCATCATTGTGATCAGTTTTTTATTCGTGCTTTTCGCATTATTTATA 1113
BSNT_04572___ 1100 TCGCCCTGACGATCACAGAACAAGCGCCATTTCTTCAAATTGTGTTTGAA 1149
| |||||||||||||..|.||.||||||.|..||||.||.||||||
BL03955 1114 T-----TGACGATCACAGAGAATGCCCCATTTTTGAAAATCGTCTTTGAA 1158
BSNT_04572___ 1150 ACCTTTTCCGCATTCGGAACTGTCGGCCTTACGATGGGGCTTACTCCTGA 1199
...||||||||.||||||||.||||||||..|||||||.||.||.|||||
BL03955 1159 GTATTTTCCGCTTTCGGAACAGTCGGCCTGTCGATGGGACTGACACCTGA 1208
BSNT_04572___ 1200 ACTGACAACAGCTGGCAA----GTGTATCATTATTGTCATCATGTTTATC 1245
..|.||..|.||.||||| || ||||||.| |.||.|||||||||
BL03955 1209 TTTAACGGCCGCAGGCAAAGCGGT-TATCATGA---TGATGATGTTTATC 1254
BSNT_04572___ 1246 GGAAGAATTGGTCCTTTAACGTTCGTGTTTTCATTCGCAAAAACAGAGCA 1295
||..|..|.||.|||.|.||..|.|.||||.|..|.||.||..|..||.|
BL03955 1255 GGCCGCGTCGGGCCTCTGACTATGGCGTTTACGCTGGCCAAGCCGAAGAA 1304
BSNT_04572___ 1296 ATCAAATATCCGTTACCCTGATGGCGAAGTGTTTACAGGGTGA 1338
..|....|||||..|.|||||.|..||||||.|||||||.|.|
BL03955 1305 GGCGCCGATCCGCCATCCTGAAGATGAAGTGATTACAGGCTAA 1347
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