Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05568 and BL03847
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:42
# Commandline: needle
# -asequence dna-align/BSNT_05568___ywoD.1.5803.seq
# -bsequence dna-align/BL03847___ywoD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05568___ywoD-BL03847___ywoD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05568___ywoD-BL03847___ywoD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05568___ywoD
# 2: BL03847___ywoD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1441
# Identity: 974/1441 (67.6%)
# Similarity: 974/1441 (67.6%)
# Gaps: 161/1441 (11.2%)
# Score: 3088.0
#
#
#=======================================
BSNT_05568___ 1 ATG------TTGTCGAAAAAAAGCCGGGCTGTTTTTTTAACAGCGGTGGC 44
||| || ||||||.|..|||||..|.|||||||||||.||.||
BL03847___ywo 1 ATGGCCGGATT---GAAAAAGAAACGGGCCCTGTTTTTAACAGCCGTTGC 47
BSNT_05568___ 45 TTCGGGAACAATGCTGAATCCGCTGAACTCGTCTATGATCTCTCTTGCGC 94
.||.||.||.||||||||||||||.|||||.||.|||||.|||.|.||||
BL03847___ywo 48 ATCAGGGACGATGCTGAATCCGCTCAACTCTTCAATGATTTCTTTGGCGC 97
BSNT_05568___ 95 TCCATAGCATCCAGCATGAGTTTCACCTCTCGTTTACAACGGTTTCCTGG 144
|.||.|||||||||||||||||||||||.||.|||.||||.||.||.|||
BL03847___ywo 98 TGCACAGCATCCAGCATGAGTTTCACCTTTCATTTGCAACCGTATCGTGG 147
BSNT_05568___ 145 CTGATTTCCTCGTTTTACTTGGCGAGTGCCGTAGCGCAGCCGGTTACGGG 194
||||||||.||.|||||..|.||.|||||.||.||.|||||.||.||.||
BL03847___ywo 148 CTGATTTCATCTTTTTATCTAGCCAGTGCGGTCGCACAGCCTGTCACAGG 197
BSNT_05568___ 195 AAAGCTCGGTGATTTGATTGGGCGGAAACGCTTGTTTTTATTCGGGCTTA 244
|||..|.||.|||||.||.||.||||||....|||||||.|..||||||.
BL03847___ywo 198 AAAAATTGGCGATTTAATCGGCCGGAAAAAGATGTTTTTGTCAGGGCTTG 247
BSNT_05568___ 245 TTCTTGTTGCGGTTTCTGCCATCGGGGCGCCGTTTGCGCCGACGTTTAT- 293
||||.|||||.||.||.||.|||||.||.||..|.||.|||.| |||.|
BL03847___ywo 248 TTCTCGTTGCCGTATCGGCAATCGGCGCTCCTCTCGCACCGGC-TTTTTC 296
BSNT_05568___ 294 -GACATTATTGGTCATGCGGCTGTTTCAATCGGTGGGGAGCAGCGCGATT 342
|.| ||.|||.|||||||..|||||||||||.|.||||||.||||.|||
BL03847___ywo 297 CGTC-TTGTTGATCATGCGTTTGTTTCAATCGATTGGGAGCGGCGCCATT 345
BSNT_05568___ 343 TATCCGTCAGGTGTCGGCTTGATTCGGAA-TCATATTCATGAGCGCCAAG 391
||.||.||.||.||.|||.||| ||.||| .||.|||||||||...||.|
BL03847___ywo 346 TACCCTTCGGGAGTGGGCCTGA-TCAGAAGCCACATTCATGAGAAGCAGG 394
BSNT_05568___ 392 CTTCAGC-CTTGGCTGTACTCTCTATTTTTGCGTCCGCCATGACGGCGCT 440
|.||.|| ||..| |||.||.||.||||||.|.||.||.|||||.||..|
BL03847___ywo 395 CGTCTGCACTCAG-TGTGCTGTCCATTTTTTCTTCGGCAATGACCGCCTT 443
BSNT_05568___ 441 GGGGCCGACAGTCGGCGGTTTTTTGATTGTA-TGGGGAGGCTGGCCGGCG 489
.||.|||||.||.||.||.|||||.||.||| |.||| ||.|||||.||.
BL03847___ywo 444 TGGACCGACCGTGGGGGGATTTTTAATCGTACTCGGG-GGATGGCCCGCC 492
BSNT_05568___ 490 ATCTTTATCGTTAATTTGCCGTTTATTATCCTCAGCTTCTTATTGGGCCT 539
|||||..||||.||.||.||.||||||.|..|||||||.||..||||..|
BL03847___ywo 493 ATCTTCCTCGTGAACTTTCCATTTATTTTGTTCAGCTTTTTGCTGGGGAT 542
BSNT_05568___ 540 GTATATGTTCCCGAAAGATCAGAAAAAAG-GGGCAGGAATCAAA------ 582
|||.|||||||||||||||.||||||||| .||| |.|||
BL03847___ywo 543 GTACATGTTCCCGAAAGATGAGAAAAAAGCCGGC-----TTAAATGTCCG 587
BSNT_05568___ 583 -ACCATTATTCAGCAGCTCGACATTCT---TGGAATTGTTTTATTTGCCG 628
.||.|.||..|||.|||.|| ||| .||||||.||.|.|||||.|
BL03847___ywo 588 CGCCGTGATCAAGCGGCTTGA---TCTCACCGGAATTCTTCTGTTTGCGG 634
BSNT_05568___ 629 GGGGAATCATTTTCCTTCTATCCTTTTTGCTGTCGTTCAGCACGTCGCCG 678
|.||||||.||.||||.||..|.|||.||||.||.||.|||||| |.||
BL03847___ywo 635 GCGGAATCGTTCTCCTGCTGGCATTTCTGCTCTCATTGAGCACG--GGCG 682
BSNT_05568___ 679 CATGCGGTT-----GAAGGTGTG------CTTGGCTTGCTTCTGCTCTGT 717
....|.||| ||.||..|| ||.|.|||||||.||.|
BL03847___ywo 683 AGCCCCGTTTTGCCGAGGGGATGTTCGGACTCGTCTTGCTTTTGAT---- 728
BSNT_05568___ 718 GCGTTTGTCTGGCGCGAGCTGAAAACGGATAAGCCGTTTATTGATGTCCG 767
||||||.|||.|.|||||||.|..|.|.|..||||||||||||.||.|
BL03847___ywo 729 --GTTTGTTTGGTGGGAGCTGAGAGTGAACAGTCCGTTTATTGATATCAG 776
BSNT_05568___ 768 TCTGTTTAAAACACAGC--GA----AACCTGTCAGCCGTGTATGTTCAGT 811
.|||||.|...||| || || |||.| |.||.||||.|||.|
BL03847___ywo 777 GCTGTTGATCGCAC-GCAGGACGTTAACTT-----CGGTCTATGCTCAAT 820
BSNT_05568___ 812 TTATTTTATTGAATGTTTTCTTCTATTGTTTATTTTTTGGTCTGCCAAGT 861
|||||.|..||||..|.||...|||.|||||.||||||||.||.||.|||
BL03847___ywo 821 TTATTATGCTGAACATCTTTAACTACTGTTTGTTTTTTGGACTTCCGAGT 870
BSNT_05568___ 862 TACTTTCAGGATGAAATGCATCTTTCTGTTCAAACGAGCGGCCTGTTTAT 911
||.|||||||||||||||||.|||||.||||||||||||||.||.||.||
BL03847___ywo 871 TATTTTCAGGATGAAATGCACCTTTCCGTTCAAACGAGCGGTCTTTTGAT 920
BSNT_05568___ 912 GCTGTTTATGTCTGGAATGAGCATCGTTG-TGTCACCTTTAACTGGAAAA 960
||||||.|||||.||.|.||||.| .||| |.||.|||||....||.|||
BL03847___ywo 921 GCTGTTCATGTCCGGGACGAGCGT-ATTGATCTCGCCTTTCGTCGGGAAA 969
BSNT_05568___ 961 TGGATCGACCGATCTGGTGTCGTCAAA------CCGATCT---TTGCGGG 1001
|||||.|||||.||.||.| ||| ||| |.| |||
BL03847___ywo 970 TGGATTGACCGTTCAGGAG-----AAACGCAGCCCG-TGTTAATTG---- 1009
BSNT_05568___ 1002 AGCGCTT--TTGATGACGGCTGGAGC---CGTGCTCTTAACCATCTTTTT 1046
|..||| ||.|||.|.||.||.|| |.||||| ||..|.|||||
BL03847___ywo 1010 -GTTCTTGCTTAATGGCAGCGGGCGCTATCCTGCTC---ACATTGTTTTT 1055
BSNT_05568___ 1047 TATCAATGTCGAGACCATTG----GGAAAGGCCTCATTCTATC---GCTC 1089
|.||.||| .|||..|| ||||||||.||||.||.|| ||||
BL03847___ywo 1056 TGTCGATG----CACCGATGTTGTGGAAAGGCATCATCCTCTCTTTGCTC 1101
BSNT_05568___ 1090 TTGGGT-ATAGGCTACGGACTGGGAAATGTCGCGCTTCAGGCAGCGATGC 1138
.|||| | |||||||.||.||.||||||||.||.|||||.||.|||.
BL03847___ywo 1102 -GGGGTCA---GCTACGGCCTCGGCAATGTCGCCCTGCAGGCTGCCATGT 1147
BSNT_05568___ 1139 TGAAAACGAGTCCTTCCAACATGGTAGGAACGACTTCAGGCCTGTTTCAA 1188
|.|...|.|||||..|..||||.||.||.||||||||.||.||.||||||
BL03847___ywo 1148 TTACGGCAAGTCCGCCGGACATCGTCGGGACGACTTCGGGGCTTTTTCAA 1197
BSNT_05568___ 1189 ACCTGCCGTTACCTAGGATCGATTTTGTCTTCGGTGATCCTTGGCATTCT 1238
||.|||||.||.||.||.|||||.||.||.||.||.||.||.||..|..|
BL03847___ywo 1198 ACATGCCGCTATCTTGGCTCGATCTTTTCGTCCGTCATTCTGGGTCTGTT 1247
BSNT_05568___ 1239 TTTTGGTAAAGAAATCACGGCAGCCCATTTT---GATATGATGGGAATCA 1285
.|||||..|||||||.||.||.|..|||||| |||.|| ||| |
BL03847___ywo 1248 GTTTGGAGAAGAAATAACCGCGGGGCATTTTCAGGATCTG--GGG----A 1291
BSNT_05568___ 1286 TTATGATCATAGCGG--GCGGAGCA-----AGCCTGTTAATG-GCTGTGA 1327
|..|.||.||.|||| || || |||.|.||.||| ||| |.|
BL03847___ywo 1292 TGGTCATGATTGCGGTTGC----CATCGGCAGCATTTTGATGAGCT-TCA 1336
BSNT_05568___ 1328 GATTT-----GCTGCATTAA----TGAAAACTGCATCTTAA 1359
||||| |||| ||.|| |||
BL03847___ywo 1337 GATTTATCAAGCTG-ATGAAGGATTGA-------------- 1362
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