Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02170 and BL03746

See Amino acid alignment / Visit BSNT_02170 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence dna-align/BSNT_02170___spoIISA.1.5803.seq
#    -bsequence dna-align/BL03746___spoIISA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02170___spoIISA-BL03746___spoIISA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02170___spoIISA-BL03746___spoIISA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02170___spoIISA
# 2: BL03746___spoIISA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 779
# Identity:     533/779 (68.4%)
# Similarity:   533/779 (68.4%)
# Gaps:          64/779 ( 8.2%)
# Score: 1697.5
# 
#
#=======================================

BSNT_02170___      1 ATGGTTTTATTCTTTCAGATCATGGTCTGGTGCATCG---TGGCCGGACT     47
                     |||.|..||||.|.|||..||.|.||.|||...||.|   ||||   .||
BL03746___spo      1 ATGCTGCTATTTTATCAATTCCTTGTTTGGCTTATTGTTTTGGC---GCT     47

BSNT_02170___     48 GGGGTTATACGTGTATGCCACGTGGCGTTTCGAAGCGAAGGTCAAAGAAA     97
                     ||...|.|||||...||||..|||||||||.|||....||.||...||||
BL03746___spo     48 GGCTCTGTACGTAGCTGCCGTGTGGCGTTTTGAAAAACAGCTCGCCGAAA     97

BSNT_02170___     98 AAATGTCCGCCATCCGGAAAACTTGGTATTTGCTGTTTGTTCTGGGCGCT    147
                     |||.|..|||||||.|.|||||.|||||..|.||.|.|||..|.|||||.
BL03746___spo     98 AAACGGTCGCCATCAGAAAAACGTGGTACCTTCTTTATGTCATCGGCGCC    147

BSNT_02170___    148 ATGGTATACTGGACATATGAGCC-CACTTCCCTATTT------ACCCACT    190
                     .||.||||.|||||..|.||.|| ||.|   |.||||      ||||.||
BL03746___spo    148 GTGATATATTGGACGCACGATCCGCAGT---CAATTTTCACAAACCCGCT    194

BSNT_02170___    191 GGGAACGGTATCTCATTGTCGCAGTCAGTTTTGCTTTGATTGATGCTTTT    240
                         .|..||.||.||.||.||.||...|||..|.||||..||.||||||
BL03746___spo    195 ----TCATTACCTGATCGTTGCCGTTTTTTTCACGTTGACAGACGCTTTT    240

BSNT_02170___    241 ATCTTCTTAAGTGCATACGTCAAAAAACTGGCCGGCAGC---GAGCTTGA    287
                     ||.|||||||.|||.|||.|.|||||.||   |||||||   ||.||.|.
BL03746___spo    241 ATTTTCTTAAATGCCTACTTTAAAAAGCT---CGGCAGCTCTGAACTCGC    287

BSNT_02170___    288 AACAGACACAAGAGAAATTCTTGAAGAAAACAACGAAATGCTCCACATGT    337
                     .|||||.||||||....||||.||||||||||||||..|.|||||||.||
BL03746___spo    288 GACAGATACAAGAATGCTTCTCGAAGAAAACAACGACCTCCTCCACACGT    337

BSNT_02170___    338 ACCTCAATCGGCTGAAAACATACCAATACCTATTGAAAAACGAACCGATC    387
                     |.|..||..||||||||||.|..|||||||||||||||||||||||||||
BL03746___spo    338 ATCAAAACAGGCTGAAAACGTTTCAATACCTATTGAAAAACGAACCGATC    387

BSNT_02170___    388 CATGTTTATTATGGAAGTATAGATGCTTATGCTGAAGGTATTGATAAACT    437
                     ||..|.||||||||||.||||||.||.|||||.|||||.||.||.||.||
BL03746___spo    388 CACATCTATTATGGAAATATAGAAGCGTATGCAGAAGGCATCGAAAAGCT    437

BSNT_02170___    438 GCTGAAAACCTATGCTGATAAAATGAACTTAACGGCCTCTCTTTGCCACT    487
                     ..|.|||...|.|||.||.||||||||..||.|.||..|.||||||.|.|
BL03746___spo    438 CATCAAACGGTTTGCCGAAAAAATGAATATATCCGCTGCACTTTGCGAAT    487

BSNT_02170___    488 ---ATTC-GACACAGGCTGATAAAGACC----GGTTAACCGAGCATATGG    529
                        |||| ||...|.||    ||.||.|    |.||    ||||||||||
BL03746___spo    488 ATAATTCAGAAGAAAGC----AAGGATCATTTGCTT----GAGCATATGG    529

BSNT_02170___    530 ATGATCCGG--CAGATGTACAAACACGGCTCGATCGAAAGGATGTTTATT    577
                     | .|.||||  | |||||.|||..|..|||.||.||.||.||.|||||||
BL03746___spo    530 A-AAACCGGTTC-GATGTTCAAGAAAAGCTTGACCGCAAAGACGTTTATT    577

BSNT_02170___    578 ACGACCAATACGGAAAAGTGGTTCTCATCCCCTTTACCATCGAGACACAG    627
                     |.||..||.||||||||.||||.|||||.||.|||.|||||    ||| |
BL03746___spo    578 ATGAAGAAAACGGAAAAATGGTCCTCATTCCTTTTTCCATC----CAC-G    622

BSNT_02170___    628 A-----ACTATGTCATCAAGCTGACGTCTGACAG-CATTGTCACGGAATT    671
                     |     ||||||||||.|||.|.||.||.|| || |.|||||||.|||||
BL03746___spo    623 ATTTTGACTATGTCATGAAGTTAACCTCAGA-AGACCTTGTCACAGAATT    671

BSNT_02170___    672 TGATTATTTGCTATTTACGTCATTAACGAGCATATATGATTTGGTGCTGC    721
                     |||||||.|.||.|||||.||.|||||.|||||.||||||.|..||||.|
BL03746___spo    672 TGATTATCTCCTGTTTACTTCTTTAACAAGCATCTATGATCTTCTGCTAC    721

BSNT_02170___    722 CAATTGAGGAGGAAGGTGAAG---GATAA    747
                     |||..||.|||||||||||.|   ||   
BL03746___spo    722 CAAACGAAGAGGAAGGTGACGACTGA---    747


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02170 and BL03746

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
