Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03732 and BL03709
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:45
# Commandline: needle
# -asequence dna-align/BSNT_03732___pbpA.1.5803.seq
# -bsequence dna-align/BL03709___pbpA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03732___pbpA-BL03709___pbpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03732___pbpA-BL03709___pbpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03732___pbpA
# 2: BL03709___pbpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2251
# Identity: 1547/2251 (68.7%)
# Similarity: 1547/2251 (68.7%)
# Gaps: 233/2251 (10.4%)
# Score: 5170.5
#
#
#=======================================
BSNT_03732___ 1 ATGAGGAGAAATAAACCAAAAAA-GCAAAATCATAAAGAGAAAAA--GAA 47
||.|||.|||||| |.||||| |||||| .||
BL03709___pbp 1 ----------ATGAACAAAAAAATGAAAAAT--------GAAAAACGCAA 32
BSNT_03732___ 48 GTCGCTTCCGATCCGGCTGAATATTTTAT---TTTTAGCTGCCTTTGTTA 94
.|||||.||.|||.||.||||.||.||.| ||.|.||| |||.|||
BL03709___pbp 33 ATCGCTCCCCATCAGGTTGAACATATTGTTCCTTCTCGCT---TTTATTA 79
BSNT_03732___ 95 TATTCACC-TGGATTATTGTGGAACTGGGCATCAAGCAGATCGTGCAAGG 143
|.|||||| |.| |..|.|||...||.|||||...|||||||||....||
BL03709___pbp 80 TTTTCACCATCG-TCGTCGTGCGCCTCGGCATGGTGCAGATCGTCTTTGG 128
BSNT_03732___ 144 CGATGATTACAAAAACCAAGCGAATAAGCAGGAACAAAGTGAAGTCAG-- 191
|||.||.||.|..|||.|||.|.|.||||||||| |||||| |
BL03709___pbp 129 CGAAGACTATACGAACGAAGTGCAGAAGCAGGAA------GAAGTC-GAT 171
BSNT_03732___ 192 --CTC----AGCGGTACCACGCGGGAAAATTTATGATCGAAACTTTAATG 235
||| ||| ||.||.||.||||||||.|||||.||.|||||.|||.
BL03709___pbp 172 GTCTCGACAAGC-GTTCCGCGGGGGAAAATATATGACCGGAACTTGAATA 220
BSNT_03732___ 236 CCATTGTGACAAATAAGGCTTTAAATGCAATCACATACAC---GAGATCT 282
|.||.||||.||||||..|..|.|||||.||.|||||||| ||.|||
BL03709___pbp 221 CGATCGTGAAAAATAAACCGATGAATGCCATTACATACACAAGGACATC- 269
BSNT_03732___ 283 AAATCGACCACGCA--AGAACAGCGCTTAAAGATCGCAAAAAAGCTGTCT 330
|||||||.|.|| ||.|||| |||.||| ||.||||||||.||..|.
BL03709___pbp 270 --ATCGACCTCTCAGGAGGACAG-GCTCAAA-ATAGCAAAAAAACTTGCA 315
BSNT_03732___ 331 GACATGATCAAAGTCGATACAAAAAAAGTAACAGAACGGGATAAAAAAGA 380
||.|||||||||.||||||||.|.|||.||||.||.||.||||||||.||
BL03709___pbp 316 GAAATGATCAAAATCGATACAGATAAAATAACGGAGCGCGATAAAAAGGA 365
BSNT_03732___ 381 TTATTGGATTTTGACTAGACCGAAAGAAGCGAAAAAGCTCATTAGCTCT- 429
.||.||||||||.||..|.|||||||||||..|.||||||||.|.|..|
BL03709___pbp 366 CTACTGGATTTTAACGCGCCCGAAAGAAGCCGAGAAGCTCATCACCGATG 415
BSNT_03732___ 430 -----------AAAG--AAAGACAGCAGGTTGAAGACAAAAAAATATCCG 466
|||| ||.|||.|||.|.||||| |
BL03709___pbp 416 AGGACCGGAAAAAAGTCAAGGACGGCAAGCTGAAG--------------G 451
BSNT_03732___ 467 ATGACGATTTATACCAGCTTCAGCTAAAACGGATTACTGATAAGCAGCTG 516
|.|||||||||||||||||.|||||..|..||||.||.||..|..|.|||
BL03709___pbp 452 AAGACGATTTATACCAGCTGCAGCTTGACAGGATCACGGAAGATAAACTG 501
BSNT_03732___ 517 AATGAATTGACGGATAAAGATATGCAGATCCTCGCTATCAAAAGGCGT-- 564
|||||||||||.|||.|||||.||.|..||.|.||.||||| ||||
BL03709___pbp 502 AATGAATTGACAGATCAAGATTTGAAAGTCTTGGCAATCAA---GCGTCA 548
BSNT_03732___ 565 -ATGGATTCAGGCTATGCTTTGACCCCTCAATATATTAAAAATGAGGATG 613
||||||||.||.||.||..||||.||.||.|||||||||||..|.|.||
BL03709___pbp 549 GATGGATTCTGGATACGCGCTGACTCCGCAGTATATTAAAAACAAAGGTG 598
BSNT_03732___ 614 TATCAGCGAAGGAAATGGCAGTGGTAAGTGAACATTTAGACGAACTGCCA 663
||.|.||.||.||||||||.||.||.||.|||||..|.|||||.||.||.
BL03709___pbp 599 TAACTGCAAAAGAAATGGCGGTTGTCAGCGAACACCTGGACGAGCTCCCG 648
BSNT_03732___ 664 GGTGTTGATGTCACGTCCGATTGGGAACGTGAATATCCGTATAAAAACCT 713
||.||.|||||.|||||.||||||.|.||.||.|||||.||| |||..
BL03709___pbp 649 GGAGTCGATGTGACGTCTGATTGGAAGCGGGATTATCCTTAT---AACGG 695
BSNT_03732___ 714 TCTTCGCTCAG-----TGCTCGGAAGTGTGTCCAGCTCTAATGAAGGATT 758
||| |||||| ||.||||.||..|.|||...||.||||||||..|
BL03709___pbp 696 TCT--GCTCAGAACGATGATCGGCAGCATATCCGATTCAAATGAAGGGCT 743
BSNT_03732___ 759 GCCGTCCAACTTGCTCGACCATTATCTGTCGCTTGGCTACAGCCGAAATG 808
.|||...|.|.||||.||.||||||.|||||||.|||||||.|||.||||
BL03709___pbp 744 TCCGAAAAGCCTGCTTGATCATTATTTGTCGCTCGGCTACAACCGGAATG 793
BSNT_03732___ 809 ACAGGGTCGGAAAAAGCTATCTGGAATACCAATATGAAAGCCTTCTGCAG 858
||.|.||||||||||||||.||.|||..|.|||||||||...|.||.|||
BL03709___pbp 794 ACCGCGTCGGAAAAAGCTACCTCGAAGCCGAATATGAAAATGTGCTTCAG 843
BSNT_03732___ 859 GGCCAAAAAGCAAAAGTCGAAAATATCACAGATTCAAA--AGGCAATGTC 906
||.||.||||..|||||..|||||||.||..|| ||| |||..||.||
BL03709___pbp 844 GGACAGAAAGAGAAAGTGAAAAATATTACCAAT--AAATCAGGGGATATC 891
BSNT_03732___ 907 ------ACGGGAA--CAAAAACGGTATCTGAAGGCAAAGCCGGGAAAGAT 948
|| |||| || |.||.||.||.|||..|||.||.|||
BL03709___pbp 892 GTCGATAC-GGAAGTCA-------TTTCCGAGGGGAAAAGCGGAAAGGAT 933
BSNT_03732___ 949 CTTGTACTAACAATTGATATTGATTTGCAAAAATCAGTGGAAAAAATTAT 998
.|.||..|.||.||||||.|||||.||||||||.|..|.|||||||||.|
BL03709___pbp 934 TTAGTCTTGACGATTGATGTTGATATGCAAAAAGCGATTGAAAAAATTGT 983
BSNT_03732___ 999 TGAGAAAAAACTTAAAGCTGCTAAAG-CAAGACCTAG---TACCGAATTG 1044
.|||.|..||||.||..||||.|||| |||| |.||| | ||| .|.
BL03709___pbp 984 CGAGGATGAACTGAAGTCTGCCAAAGCCAAG-CATAGCGCT-CCG--CTT 1029
BSNT_03732___ 1045 TTGGATCGTGCATTCGTTGTCATGATGGACCCTAGAAACGGCGAAGTGCT 1094
.|.||.||.||||||||.||.||||||||.||..|||||||.||||||.|
BL03709___pbp 1030 CTCGACCGCGCATTCGTCGTTATGATGGATCCGCGAAACGGGGAAGTGTT 1079
BSNT_03732___ 1095 GACAATGGCAGGGAAGCAGATT--AAACGA-----GAAAATGGAGCCTAT 1137
..|.||.||.||.||.|||.|| |||||| |.|||| ||
BL03709___pbp 1080 ATCGATTGCCGGCAAACAGCTTAAAAACGAAAGCGGCAAAT------TA- 1122
BSNT_03732___ 1138 AAGTTTGATGATTATGCATTAGGAGCCATGACTTCATCCTACGCTATGGG 1187
|||.||||.||.|||||..|.||.||.|||||.||.||.||.||.|||||
BL03709___pbp 1123 AAGGTTGACGACTATGCGCTCGGCGCGATGACGTCTTCTTATGCGATGGG 1172
BSNT_03732___ 1188 ATCAGCTGTAAAAGGTGCAACCGTTTTGACCGGTCTTCAAACTGGAGCGA 1237
.||.|||||.|||||.||.||.|||||.||.|||||.||.||.|||||.|
BL03709___pbp 1173 CTCGGCTGTCAAAGGGGCCACTGTTTTAACAGGTCTGCAGACGGGAGCCA 1222
BSNT_03732___ 1238 TTAATTTGAATAC----TGTATTTAAGGATGAACCATTGTATATCGGCCA 1283
|||||||.||||| |.|.|| ||||||||..|.||||||||
BL03709___pbp 1223 TTAATTTAAATACGACTTTTCTT----GATGAACCGCTCTATATCGG--- 1265
BSNT_03732___ 1284 GGATAAAAG----AGGGAAAAAATCTT-GGCAA--AACTTAGGGCCGGTT 1326
||||| |..||||||||||| |||.| |||||.||..|..|.
BL03709___pbp 1266 ----AAAAGGAAAACCGAAAAAATCTTGGGCGAGCAACTTGGGAACACTG 1311
BSNT_03732___ 1327 GGTATTCAAACTGCATTAGAGAAGTCATCAAACGTTTTTATGTTTAAAAC 1376
|||||.||....||..|.||.|||||.||||||||.||.|||||||||||
BL03709___pbp 1312 GGTATCCAGGGAGCTCTTGAAAAGTCTTCAAACGTGTTCATGTTTAAAAC 1361
BSNT_03732___ 1377 AGCTATTGCAGTTGGTAAAGGTGAATATAAACCTCACCAAGCATTGCCTT 1426
.||.||.||..||||||||||..|||||||..|.||.|| |||..
BL03709___pbp 1362 GGCGATCGCCCTTGGTAAAGGCCAATATAAGGCGCATCA------GCCGC 1405
BSNT_03732___ 1427 TGGATACTTC-------TGCATTTGATACCTTCAGAAATTATTTCAGTCA 1469
|.|| .|||| .|||||||||||.|||||..||||||||||.||
BL03709___pbp 1406 TCGA-CCTTCAAACAAAAGCATTTGATACATTCAGGTATTATTTCAGCCA 1454
BSNT_03732___ 1470 ATTTGGATTAGGAGTAAAAACAGGAATTGATCTACCAAATGAAATGACGG 1519
.||.||..|.||.||.|||||.|||||.|||||.|||||||||....|.|
BL03709___pbp 1455 GTTCGGCCTCGGCGTCAAAACCGGAATCGATCTGCCAAATGAAGCTTCAG 1504
BSNT_03732___ 1520 GATATAAAGGTA---CAAGCAGATTATCTGGTTTCTTGCTTGATTTCGCC 1566
|.||.||||| | ||| |||.|..|.||||||.|||||||.||..||
BL03709___pbp 1505 GCTACAAAGG-ATCTCAA--AGACTGCCCGGTTTCCTGCTTGACTTTTCC 1551
BSNT_03732___ 1567 ATTGGACAGTATGATACTTATACACCGCTGGAATTGGCTCAATATGTCTC 1616
||.|||||||||||.||.||.|||||||||.|..|||||||.||.||.||
BL03709___pbp 1552 ATCGGACAGTATGACACATACACACCGCTGCAGCTGGCTCAGTACGTGTC 1601
BSNT_03732___ 1617 CACCATAGCAAATGGTGGCTACCGCATGAAGCCTCAGCTTGTAAAGGAAG 1666
.||.||.||.|||||.||.||||||||||||||.||||||||.||.||..
BL03709___pbp 1602 AACGATTGCCAATGGGGGATACCGCATGAAGCCGCAGCTTGTGAAAGAGA 1651
BSNT_03732___ 1667 TCAGAGATTCAAATGCGAAAAAAGGGATCGGCGCAGTCGTT---GATTCT 1713
|||||||..|..||.||||||||||.||||| ||.|||| .|.|||
BL03709___pbp 1652 TCAGAGAGCCCGATTCGAAAAAAGGAATCGG---AGCCGTTACACAGTCT 1698
BSNT_03732___ 1714 GTTCAGCCTGAAGTATTGAATAAAGTCGATATGAAGAGTAGC------TA 1757
||.|||||||||||||||||.|||||.||.||| ||| ||
BL03709___pbp 1699 GTGCAGCCTGAAGTATTGAACAAAGTGGACATG------AGCGATGAATA 1742
BSNT_03732___ 1758 TATTGAAGAGGTCCAAGCCGGTTTTAGACGGGT--TGCCACTAAAGGGAC 1805
|||..||||.|||||....||.||.||.||.|| || ||.|||||.||
BL03709___pbp 1743 TATAAAAGAAGTCCAGAAAGGATTCAGGCGCGTAATG--ACAAAAGGTAC 1790
BSNT_03732___ 1806 AGCTGCAGGTCAACTGGCTTCAGCATCGTATAAACCAGCTGCAAAAACAG 1855
.||.||.||.||..|.||.||.||.||.|||||||||||||.||||||||
BL03709___pbp 1791 GGCAGCGGGACAGTTTGCCTCTGCTTCATATAAACCAGCTGGAAAAACAG 1840
BSNT_03732___ 1856 GAACAGCCCAATCATTTTACGACGGACCGGATAAATCAAAAACAGGAACA 1905
||||.|||||.||.||.||.|||||||||||.|||||.|||||.||||||
BL03709___pbp 1841 GAACGGCCCAGTCTTTCTATGACGGACCGGACAAATCGAAAACGGGAACA 1890
BSNT_03732___ 1906 --GACACTTATAATACGACGCTTGTGGCTTATGCACCAGCTGACAATCCT 1953
|||| ||.|||||.||||||||.||.||.|||||....||.|||||.
BL03709___pbp 1891 TCGACA--TACAATACAACGCTTGTTGCCTACGCACCTTACGATAATCCG 1938
BSNT_03732___ 1954 GAGATTGCTATTTCTGTCGTAGTTCCTTGGACTTACATTGATTACAATCA 2003
||..|.||||||||.|||||.|||||||||..|||.|.|||.||....||
BL03709___pbp 1939 GAAGTCGCTATTTCCGTCGTCGTTCCTTGGGTTTATAATGACTATGGCCA 1988
BSNT_03732___ 2004 AAGATACTCAATTACAAACGAAATCGGCAGGGAAGTAATGGATAAATATT 2053
.|||||.||.||.|||||||||||||||.|..||||..|.|||||.||||
BL03709___pbp 1989 GAGATATTCGATCACAAACGAAATCGGCCGAAAAGTGCTTGATAAGTATT 2038
BSNT_03732___ 2054 TTGAGCTGAAATCGAAGCAGGACAAAGAAGATACTCAGCAAAAGAATAAA 2103
||||.||||||||.||.||....||||||.|||||....||||.||||||
BL03709___pbp 2039 TTGAACTGAAATCAAAACAATCAAAAGAAAATACTGTCGAAAAAAATAAA 2088
BSNT_03732___ 2104 GACAAAATTG---AAGAAAATGCAGAAAACACAACGTCTTCTGATAACTA 2150
||||||||.| |||||..|.|||||.|.
BL03709___pbp 2089 GACAAAATCGAAAAAGAAGCTACAGAATAG-------------------- 2118
BSNT_03732___ 2151 A 2151
BL03709___pbp 2118 - 2118
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